Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2721 ATGGCGAACAAGTTTCTAGCGTTAGCTTGCTTAGGCAATGAAGGGTCAGGGTCGAGGTCTGGCCACCTTTCCCCCCGACCCCACTACCCATCGATGCCGCGGTACCCCAAGGGCGTCACGGTGGAAGAAGGAAGCAGCATGCACATGATGGCCCTTTTCTCCGTCATCGGAATGACTTGCTCCGCCTGCGCCGGCTCCGTCGAGAAAGCCATCAAACGCCTCCCCGGCATTCGTGAGGCCGTCGTTGACGTTCTCAACAACCGTGCCCAGGTCCTCTTTTACCCCTCCTTCGTTAACGAGGAGACCATTCGTGAGGCCATTGAAGATGCTGGTTTTGAAGCCACCTTAGATGAGTCCAACGAGACAACTGTTCAGGTATGCCGCATCCGCATCAAAGGAATGACTTGCACGTCGTGTTCATCCACGGTCGAATCAGCCCTGCAAGCAATTCAAGGAGTGCTCAAGGCCCAGGTGGCTCTGGCAACCTGA 489 0.5624 MANKFLALACLGNEGSGSRSGHLSPRPHYPSMPRYPKGVTVEEGSSMHMMALFSVIGMTCSACAGSVEKAIKRLPGIREAVVDVLNNRAQVLFYPSFVNEETIREAIEDAGFEATLDESNETTVQVCRIRIKGMTCTSCSSTVESALQAIQGVLKAQVALAT* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2721 162 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Dod04g2721 162 CDD HMA 129 162 IPR006121 GO:0046872
Dod04g2721 162 CDD HMA 53 115 IPR006121 GO:0046872
Dod04g2721 162 ProSiteProfiles Heavy-metal-associated domain profile. 126 162 IPR006121 GO:0046872
Dod04g2721 162 Pfam Heavy-metal-associated domain 129 162 IPR006121 GO:0046872
Dod04g2721 162 Pfam Heavy-metal-associated domain 53 113 IPR006121 GO:0046872
Dod04g2721 162 Gene3D - 50 117 - -
Dod04g2721 162 ProSiteProfiles Heavy-metal-associated domain profile. 50 116 IPR006121 GO:0046872
Dod04g2721 162 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 21 162 - -
Dod04g2721 162 TIGRFAM TIGR00003: copper ion binding protein 53 114 IPR006122 GO:0005507
Dod04g2721 162 ProSitePatterns Heavy-metal-associated domain. 55 84 IPR017969 GO:0046872
Dod04g2721 162 Gene3D - 125 162 - -
Dod04g2721 162 MobiDBLite consensus disorder prediction 14 35 - -
Dod04g2721 162 PANTHER ATP7, ISOFORM B 21 162 - -
Dod04g2721 162 SUPERFAMILY HMA, heavy metal-associated domain 49 120 IPR036163 GO:0046872
Dod04g2721 162 SUPERFAMILY HMA, heavy metal-associated domain 124 162 IPR036163 GO:0046872
Dod04g2721 162 PRINTS Copper-transporting ATPase 1 signature 105 125 - -
Dod04g2721 162 PRINTS Copper-transporting ATPase 1 signature 76 99 - -
Dod04g2721 162 PRINTS Copper-transporting ATPase 1 signature 149 162 - -
Dod04g2721 162 PRINTS Copper-transporting ATPase 1 signature 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2721 Dod-Chr4 51198000 51199178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2721 57 162 Primary Pumps ATPases AT1G63440 27.358 8.75e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2721 K17686 - gmx:100810141 254.988