Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2699 ATGGCATTCAGCGGGACCCAACAGAAATGTAAGGTTTGCGATAAAGTTGTTCACCTTGTTGAATCACAATCTGCAGATGGTTCTCTTTATCACAAGAACTGCTTCAAATGTAGCCATTGCCATGGCCGTCTCGCGATAAGCAACTACTCATCGATGGATGGAGTTTTATACTGCAAGCCTCACTTTGAGCAGCTTTTCAAGGAAAATGGGGCAAACTTGGCAAAGAAATCCTTGTCCTGTAAGATCCCTTTTGCTCCCCTTAGGATGCGTTTGACTAGGAAACCAAGCAGACTCGCCTCATTCTTCTCTGGGACTCAGGATAAATGTTCAGCATGCAAGAAAACTGTATATCCATTAGAGAAGTTGACCGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGTACACATGGAGGATGTTTCCTAAATCCTTCATCCTATGCTGCTCTTGATGGATTCCTTTACTGCAAACCTCACTTCTCTCAGTTGTTCAAGGAGAAAGGTAGCTACAGTTATCTTTCTAAGGCAGCTTCAATGAAGAAAAATCAAGCAGAGGAAGAGAAAACTGAGACACCAGCAGACACATCAGAGGAAGCTCCAAAGGAAGAACAACAAGATGGTGATGCTGCCCTCACTCAGGAGCACTAG 651 0.4378 MAFSGTQQKCKVCDKVVHLVESQSADGSLYHKNCFKCSHCHGRLAISNYSSMDGVLYCKPHFEQLFKENGANLAKKSLSCKIPFAPLRMRLTRKPSRLASFFSGTQDKCSACKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLNPSSYAALDGFLYCKPHFSQLFKEKGSYSYLSKAASMKKNQAEEEKTETPADTSEEAPKEEQQDGDAALTQEH* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2699 216 MobiDBLite consensus disorder prediction 182 216 - -
Dod04g2699 216 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Dod04g2699 216 Gene3D Cysteine Rich Protein 103 173 - -
Dod04g2699 216 Gene3D Cysteine Rich Protein 4 72 - -
Dod04g2699 216 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dod04g2699 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 70 - -
Dod04g2699 216 Pfam LIM domain 10 65 IPR001781 -
Dod04g2699 216 Pfam LIM domain 109 164 IPR001781 -
Dod04g2699 216 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Dod04g2699 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Dod04g2699 216 SMART lim_4 108 160 IPR001781 -
Dod04g2699 216 SMART lim_4 9 61 IPR001781 -
Dod04g2699 216 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Dod04g2699 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 173 - -
Dod04g2699 216 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Dod04g2699 216 CDD LIM1_SF3 6 68 - -
Dod04g2699 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2699 Dod-Chr4 50935823 50937292 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dod04g2699 LIM 5e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2699 - K09377 gmx:100499865 308.145