Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2698 ATGTCAGCCAACGGGACTCAACAGAAATGTAAGGCTTGCGATAAAGTTGTTCACTTCGACGAATTACAATCTGCCGATGGTTCTCTTTATCACAAGAACTGCTTAAAATGTAGCCATTGCAATGGCCGGCTAACGATGGAAAGCCACCAAATGAGTTGGTATGTATTCCACAAAGTACCAGACACCCTTTTCTGTTTATTTGAAATATCTGTTTTAAAAATTGATCAGTTTGTTGTGTATGTGTTTTATGGTGGGTTCAATGTTCCACTACGAGGTATGAAGGGCTCCCCTAAGCTAGGTGATGAGTTGTTCAAGGAGAAAGGTAGTTACAGTTATCTCTTGAAGGTAGATTTAATGAAGAAAAATCAAGCAGAGGAGAAGATAATTGAGATACCAGACACATCGGAGGCAACACCAAAGGAAGAACAACAAGATGGTGTTGCTGCCCTCACTCAAGAGCAGTAG 465 0.4086 MSANGTQQKCKACDKVVHFDELQSADGSLYHKNCLKCSHCNGRLTMESHQMSWYVFHKVPDTLFCLFEISVLKIDQFVVYVFYGGFNVPLRGMKGSPKLGDELFKEKGSYSYLLKVDLMKKNQAEEKIIEIPDTSEATPKEEQQDGVAALTQEQ* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2698 154 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 35 - -
Dod04g2698 154 Gene3D Cysteine Rich Protein 1 70 - -
Dod04g2698 154 ProSiteProfiles LIM domain profile. 8 75 IPR001781 -
Dod04g2698 154 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dod04g2698 154 SMART lim_4 9 68 IPR001781 -
Dod04g2698 154 Pfam LIM domain 10 48 IPR001781 -
Dod04g2698 154 PANTHER OS06G0237300 PROTEIN 102 143 IPR045268 GO:0051015
Dod04g2698 154 PANTHER OS06G0237300 PROTEIN 1 51 IPR045268 GO:0051015
Dod04g2698 154 MobiDBLite consensus disorder prediction 130 154 - -
Dod04g2698 154 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 102 143 - -
Dod04g2698 154 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2698 Dod-Chr4 50929682 50932513 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g2698 LIM 2e-06 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2698 - K24413 oeu:111375120 89.3521