Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2680 ATGGACTGGAATTTGAAAGCACCCTCTTGGGATTTGAGTGAAGTGGATCAGGCAGCCTTACCCAACATAGAAACAGTGGATGGTTCAAGCAGATTTGGTGTTTACAGAGCAAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGGCAGGTGGGGAATTCTGGCACAGAACCAATGGTGACTAAGCCCAAAGATGCTGCTGCTGTTGGAGTGTCCAAAATGGCAGCCTCACCTTCAGGGTCATCGAAGAGAGCTCGAGCCATTAACAACGGGAACCAGACAGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGTACTTGTAGGGACTATCACAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTGCTCAGGTCACAATTGGTGGCCAGAAGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAGTTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGACACAACCGACGGAGGAGAAAGCCCCAGCCAGAACCCCTTACGAGATCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCCTTCACAAGTTCACACGTGTTCCCTTCCTCTGCTATGGTGAATTCTGGTTGGAGCGGAGGAGTTGTTACTTCCTGTGATGTTAGGCTCCACAGCCACAGTAGCCAACAGCAACAAGTTCACATGGTTGACAAACAGGACCTTTTTCTAGGATCCTCACCAACAAGCTACAACAAAGAAGGGAAGCAACTGGCATCATTCTTGCAAGGAGACAACCTCAGCAACCAGCAAAGTCCACATCTCCCAGCTGCTTCTGTGTGCCACAGCCAGACACTGATGAGGAGCAGCCCTTTTACAGAAAGCGGGGGTTTGAGATGCAGAATGTTCTGTGATAGCCTAACCAGTTCAGTCCACGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACACACAACAATCCTGGGAATGGATTGAACCAAATGGTGCAGCCTCCTCCTGCTCACTCATCATCATCATCCTCTCTCATGCAACCCTTAGGGCTGAGCCTGCATGATAGCAGCATGGAACCTGTAGACACAGTTTTGGGTCCAAGTGGGAGTGACCATTGTTCCTCGATGTATAACATGGATTCTCATGGATCCCAGGGGGATGATGCCCCTCAACTGTTTCCCTTTCAATGGGAGTAG 1206 0.4925 MDWNLKAPSWDLSEVDQAALPNIETVDGSSRFGVYRAKGEFSVDLKLGQVGNSGTEPMVTKPKDAAAVGVSKMAASPSGSSKRARAINNGNQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFTSSHVFPSSAMVNSGWSGGVVTSCDVRLHSHSSQQQQVHMVDKQDLFLGSSPTSYNKEGKQLASFLQGDNLSNQQSPHLPAASVCHSQTLMRSSPFTESGGLRCRMFCDSLTSSVHDSSCALSLLSSPQTHNNPGNGLNQMVQPPPAHSSSSSSLMQPLGLSLHDSSMEPVDTVLGPSGSDHCSSMYNMDSHGSQGDDAPQLFPFQWE* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2680 401 Pfam SBP domain 96 169 IPR004333 GO:0003677
Dod04g2680 401 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 401 - -
Dod04g2680 401 MobiDBLite consensus disorder prediction 320 350 - -
Dod04g2680 401 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Dod04g2680 401 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 401 IPR044817 GO:0003677
Dod04g2680 401 MobiDBLite consensus disorder prediction 159 181 - -
Dod04g2680 401 SUPERFAMILY SBT domain 94 175 IPR036893 GO:0003677|GO:0005634
Dod04g2680 401 Gene3D - 87 157 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2680 Dod-Chr4 50784128 50788423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2680 1 401 SBP-box Gene Family AT5G50670 41.766 6.42e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod04g2680 SBP 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2680 - - gmx:100805328 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2680 04 50784128 50788423 Dod09g0126 09 1950093 1955287 PCT