Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2651 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTTGACTCATCATTCTTCTTCCCTAATACCCCCACAACCACAAAGATGTCTTCTTTTGAGGAGCGAGCTCATATAAACACTTGCCCTTCTCCTCCTCAATTTCCACTTCATCAGGAAGCTTCTTCTGTTGTGACTAATCAGGATACTATTAGCTGTGTTGATCAAAGCTCCAAGGTTACCATCAGTTACACTGACCCTTCTTCTTTTGTGACTCAGAACCACAGCCCTGAGACCTCTATGGTAGTTGATAAGCTTGAAAACGGTGAGCAGGTCACTCAGAAGGTTATTACTACTCCTATGGATAATAAGAAGAGGAAAACTACAAATGGATCTTCCTTGAATAATAATAGCCCCCAATCCAAGGACTCAACAGAAGGGAGAAACAAGAGACAAAAGAAGAGCAATGGTGGGGTTAAAGGAGAGGACAAGCCACAAGAAGAGAAGAAAGATAAGAAAAAGGGTCCTGAAGAGCCTCCAACAGGCTATATCCATGTTAGAGCAAGGAGGGGTCAAGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAAGATGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCATCCTTGAGCCCCTTGTTCCTTGACTTAGCAATGGACATGGACACCCTCTTGGTTAGACCAGATCAGAAAATAAACAGCATACCACCATCAGCAACACTACCATCATCAGTACCACAATGCAGCCCCAGCCTGGCCACAACATTTGCTGATACAACAACCGTGACCACAAGCTTCCCAGCTTCAAATGATTATCTTTTGGATTATTCATCCCCAGTTTTCCTTCAAGGGCAGAGGTCAAATGTCTTCTCTGAGTTTCAGTATACCGGTGGTCAGTTCTGGGACGGAGAAGACCAACGACAAAAGCTGCTTCATCATCCATATGGATTCGGCAACAACTTATGTTCCTTAAATTAA 1089 0.4371 MAAFSYQYHPFLVDSSFFFPNTPTTTKMSSFEERAHINTCPSPPQFPLHQEASSVVTNQDTISCVDQSSKVTISYTDPSSFVTQNHSPETSMVVDKLENGEQVTQKVITTPMDNKKRKTTNGSSLNNNSPQSKDSTEGRNKRQKKSNGGVKGEDKPQEEKKDKKKGPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASLSPLFLDLAMDMDTLLVRPDQKINSIPPSATLPSSVPQCSPSLATTFADTTTVTTSFPASNDYLLDYSSPVFLQGQRSNVFSEFQYTGGQFWDGEDQRQKLLHHPYGFGNNLCSLN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2651 362 SMART finulus 189 239 IPR011598 GO:0046983
Dod04g2651 362 MobiDBLite consensus disorder prediction 106 134 - -
Dod04g2651 362 Gene3D - 180 251 IPR036638 GO:0046983
Dod04g2651 362 MobiDBLite consensus disorder prediction 135 191 - -
Dod04g2651 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 362 IPR024097 GO:0006355
Dod04g2651 362 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 362 - -
Dod04g2651 362 MobiDBLite consensus disorder prediction 106 191 - -
Dod04g2651 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 249 IPR036638 GO:0046983
Dod04g2651 362 CDD bHLH_AtBPE_like 173 249 - -
Dod04g2651 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Dod04g2651 362 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2651 Dod-Chr4 50406281 50409272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2651 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 40.541 3.05e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g2651 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2651 - - gmx:100796018 397.897