Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2643 ATGGACCCTGCAGGTTCAGGTTCTGCTTCATGGGACAGAAGAAACACTGATGTTGCCAACATCAACAACAGGTATGAACTGATCAGCCCTATGCCTGTGCGCTCTTTAAACCCCACCATGCCTCAGGTCAGTGAAGAATGGTACACGGCCAATAACAGTACTATCCAAAATCAAAATCAACCACAACCACAACCAGATGCAAGGGACATGCCTTTCTTTCCCGGCTTTGGTGCTGACCAAGATAATCCATTTTTGAATCCATTTGAGTCCTCATCTTCGGTACCGCCCTATCCATCTATGTTCAGCAATCTGGACTCTTCTCATCAGGTGCAGTACTTTCAGGCTCCAAAACCCAACTTCTCTTCTCTTCTCAGTGGCATCCCTAGCAACCCTTTATTGGATCAGCATGGATTTGAAAATGGTAATCCTTCCCAGATCGGGTTTCTTGAGCCTCAAGCTTTCAGCACCTCAAATGTGCCCAACACAGATGCTGGCCTCTTTGTTGGGGGGTTCAGCAACATCAACATGAACTCAAACAACCTGTTAGGCCTTCCAGGTTTGAGCTTAGATCCCAACTTAGCAACAACCATGAGTGTGATCCCACAAGATAATAAGCCAAAGCTTGGCCTATTTGAGGGTTTTCACAACGTTGAGAATGGTCTTGCAAATTCGTGGCTGAACAGGACCAACATTCTGAGACCCCTTGAATCGTTGCCTCCATCAGGTGCACAGCCAACTCTTTTTCAGAAGAGAGCGGCACAAAGGAAAAACAAGAAAGATGAAAAGGGCAAGGGTAAAGTTGAGGAAGAAGGGAATGATAAGAAAAGGAACATGATCATCGATGGAGCAGCGGTTGTTGAAGGTGGCTATTTTGATGGGCTTGGTGGCTGTGGATTGAACAATGATGATTCTGATCATGACATGGCTGAGGATAGCAGTAATGATGATTACAACAAGATGATAGAAGAGAGTTGTAAGAATGGTGGAAACAACAGCTCAAGTAATGCCAACAGCGCCACCATCACGGGTGCCTTCACTGTGAACCAGAAAGGGAAGAAGAAGTCCGGAATGCCTGCCAAGAACTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTACACGCTGAGATCCGTTGTTCCAACTATTAGCAAAATGGACAGGGCTTCAATCCTTGGTGATGCAATCGATTATATGAAAGGACTACTGCAAAGGATCAATGACCTTAATAACGAATTGCAGTCGATGCCTCCTGCACCTTCTTCACTGCCACTGCCACTGCCACCTGCTCCAGGCTTGCACCCTTTGAGTCCCACCACTCTCCCTGCTCTACCCAGCCGCATGAATGAACCTTGCCCCAGTTCATTGCCAAGCCCCACTGGCCAACCTGCCAAGGTCGAGGTTGGGCTGCGCGAAGGAGCTGTGAATATCCACATGTTATGTGATAGCAAACCTGGTCTCTTGCTCTCAACCCTGACCACTTTGGATACCCTTGGGCTAGACATCCAGCAGGCTGTTATCAGCTTCTTCAATGGATTTGCTATGGATGTTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCATCCGGAGCAAATCAAGGCAGCACTCATGGAAGCAGCTAGCTCCCCCAACCCCAACATGATCTAG 1662 0.4765 MDPAGSGSASWDRRNTDVANINNRYELISPMPVRSLNPTMPQVSEEWYTANNSTIQNQNQPQPQPDARDMPFFPGFGADQDNPFLNPFESSSSVPPYPSMFSNLDSSHQVQYFQAPKPNFSSLLSGIPSNPLLDQHGFENGNPSQIGFLEPQAFSTSNVPNTDAGLFVGGFSNINMNSNNLLGLPGLSLDPNLATTMSVIPQDNKPKLGLFEGFHNVENGLANSWLNRTNILRPLESLPPSGAQPTLFQKRAAQRKNKKDEKGKGKVEEEGNDKKRNMIIDGAAVVEGGYFDGLGGCGLNNDDSDHDMAEDSSNDDYNKMIEESCKNGGNNSSSNANSATITGAFTVNQKGKKKSGMPAKNLMAERRRRKKLNDRLYTLRSVVPTISKMDRASILGDAIDYMKGLLQRINDLNNELQSMPPAPSSLPLPLPPAPGLHPLSPTTLPALPSRMNEPCPSSLPSPTGQPAKVEVGLREGAVNIHMLCDSKPGLLLSTLTTLDTLGLDIQQAVISFFNGFAMDVFRAEQCNEGQDLHPEQIKAALMEAASSPNPNMI* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2643 553 MobiDBLite consensus disorder prediction 253 274 - -
Dod04g2643 553 PANTHER BHLH TRANSCRIPTIONAL FACTOR 90 546 - -
Dod04g2643 553 MobiDBLite consensus disorder prediction 422 437 - -
Dod04g2643 553 Pfam Helix-loop-helix DNA-binding domain 363 405 IPR011598 GO:0046983
Dod04g2643 553 MobiDBLite consensus disorder prediction 417 437 - -
Dod04g2643 553 SMART finulus 362 411 IPR011598 GO:0046983
Dod04g2643 553 CDD bHLH_AtAMS_like 359 418 - -
Dod04g2643 553 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 405 IPR011598 GO:0046983
Dod04g2643 553 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 431 IPR036638 GO:0046983
Dod04g2643 553 Gene3D - 348 420 IPR036638 GO:0046983
Dod04g2643 553 MobiDBLite consensus disorder prediction 249 274 - -
Dod04g2643 553 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 90 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2643 Dod-Chr4 50322179 50325033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2643 41 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 43.058 4.51e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g2643 HLH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2643 - - ahf:112732910 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2643 04 50322179 50325033 Dod09g0090 09 1248599 1252667 PCT