Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2642 ATGGCAACAGGAGAGGTATTGATGAACAACAATAATGATGGTAGGAACGGTGCAGAAGGTCAAAACGCTTCTTCATCTTCATCAGCTAGAGAGGCAGAAGTAGCGCTTTACAGGGAGCTATGGCACGCGTGTGCAGGTCCTCTTGTGACAGTGCCACGAGAAGGAGAGCGCGTGTTCTATTTCCCTCAAGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAGGTAGCAGACCAGCAGATCCCAGTTTACGATCTCCCTTCCAAGATCCTTTGTCGGGTCATCAAAGTCATGCTCAAGGCGGAGCCAGACACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCGGAGTCAAATCAAGATGAGAATGCTGTGGAGAAAGAGTCGCCGCCGGCTCAGCCACCTCGATTTCATGTGCATTCATTTTGCAAAACATTGACTGCCTCAGATACAAGTACTCATGGGGGGTTTTCGGTGCTGAGACGACATGCTGATGAATGCCTTCCGCCTCTGGACATGTCAAAGCAGCCACCTACACAGGAATTGGCGGCCAAGGATCTACATGGGAATGAGTGGCGATTCAGGCATATATTTCGCGGTCAACCGCGTAGACACTTGCTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGAGTTGGGGTCAGGCGTGCAATGAGACAGCAGAGCAATGTTCCATCTTCAGTTATCTCTAGCCACAGCATGCATCTTGGTGTGCTTGCAACTGCGTGGCATGCCATCTTGACTGGGACCATGTTCACTGTTTATTACAAACCTAGGACCAGTCCAGCTGAATTTATCGTTCCTTGCGAACAATACATGGAATCTGTTAAAAATAATTATACCATAGGGATGCGGTTCAAAATGAGGTTCGAGGGTGAAGAGGCTCCCGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACTCCCAAAGATGGCGGGAATCCAAATGGAGGAATCTTAAGGTGAGATGGGACGAAACATCGAACATACCTCGACCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCGGCTCTAAATCCTCTTCCGATGCCCAGACCTAAAAGGCCTCGATCTAATGCAGTTCCTTCGTCCCCAGATTCTTCTGTTCTTACTCGAGAAGCATCCTCTAAAGTGAGCATAGACCCTTTACCAGCAAGTGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGCAATTTTGCTGAAAGCAACGATTCAGATACTGCTGAAAAGCCTGTTGTGTGGGCACCTGCAGTAGATGATGAAAAGATTGATGTTTCTGCTTCTAGAAGGTACAGGTCAGAGGGCTGGATGTCAATGGGGAGGCGTGAGCTACCGTGCTCGGATCTTCTTTCAGGCTTTGGGGCCAATGGAGATCCTTCTTCCCATCAATCCTTGGTCGATCAAACTGGCTCCGTAGCTAACCCTGCTAGAAAAAATTGTTGGACCGTGAAGGCAAAATTAGTGTGCTTGGTAGCAGTCCATGGCCTGTAA 1608 0.4845 MATGEVLMNNNNDGRNGAEGQNASSSSSAREAEVALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQQIPVYDLPSKILCRVIKVMLKAEPDTDEVFAQVTLLPESNQDENAVEKESPPAQPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQSNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPCEQYMESVKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSQRWRESKWRNLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPLPASGFPRVLQGQELSTLRGNFAESNDSDTAEKPVVWAPAVDDEKIDVSASRRYRSEGWMSMGRRELPCSDLLSGFGANGDPSSHQSLVDQTGSVANPARKNCWTVKAKLVCLVAVHGL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2642 535 Gene3D - 139 244 IPR015300 -
Dod04g2642 535 SMART B3_2 142 244 IPR003340 GO:0003677
Dod04g2642 535 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod04g2642 535 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Dod04g2642 535 MobiDBLite consensus disorder prediction 394 409 - -
Dod04g2642 535 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Dod04g2642 535 Gene3D - 305 375 - -
Dod04g2642 535 MobiDBLite consensus disorder prediction 1 27 - -
Dod04g2642 535 MobiDBLite consensus disorder prediction 373 415 - -
Dod04g2642 535 MobiDBLite consensus disorder prediction 374 392 - -
Dod04g2642 535 PANTHER AUXIN RESPONSE FACTOR 2 18 521 - -
Dod04g2642 535 SUPERFAMILY DNA-binding pseudobarrel domain 137 271 IPR015300 -
Dod04g2642 535 CDD B3_DNA 140 242 IPR003340 GO:0003677
Dod04g2642 535 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 521 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2642 Dod-Chr4 50288079 50322005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2642 1 517 B3 DNA Binding Superfamily AT5G62000 74.354 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod04g2642 B3 1.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2642 - - gmx:100815956 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2642 04 50288079 50322005 Dod09g0089 09 1242362 1248002 PCT