Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2641 ATGCATTTTGCTAAGCTCGATGACTCCCCCATGTTCCGCCAACAGCTGCAGTGCTTGGAGGAAAGTGTAGAATCATTACGCCTCAGATGCTTCAAGCTATACAAAGGATGCCGAAAATATACGGAAGGACTTGGAGAGGCTTATGATGGGGACATTGCATTTGCCAGTGCCCTTGAAAATTTTGGAGGAGGGAATAATGATCCTCATTTTGTTGCTTTAGGAGGACCTGTTATGAACAAATTTACTATTGCTTTGAGAGAAATAAGTACATACAAGGAACTCCTTCGGTCACAGGTAGAGCAGTTGCTCAATGACCGGTTACTGCACATCATCAATGTTGACATCCAAGAAGTCAAGGAAGCTCGTAAGCGTTTCGACAAAGCTTCCCCAGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAAAAAAAGCACAAAGCTTGATATTGCCACTGTCATAGAAGAGGAATTGCAGAATGCAAGGACCTCATTTGAGGAAGCCCGTTTCAATCTGGTTGGTGCTCTCAATAATATTGAGGCCAAGAAGAGATTTGAGTTCTTAGAGGCTGTCACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTACATCAGATGGAACCATTTTTTAACGAGATTTTGGATTATGTACAACAATCAAAAGAAAGTTACAATAAGGAGCAGATTTCTCTTTATAAAAGAATGGAAGAGTACAAAAAGCAAGTATATCAAGAAAGTAGGATGTCCTTGAATGGCCCTTATGGTTCTCCCTGTGGAGACTCTGCGCATCCTTTTTCTAGGATATCAAATGAAGTGGCTGATATAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTAAGGGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTACTATCGCAAACAATGGAACGGGCCACATGGCAGCAATCAACCATCTGCACAAAGGAACAGTACCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTGTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCACGTCATACAGTAAACCTGCTGACATCAACAATCAAAGCTGATGCTGATCAGTCGGATTTAAGATTCTGCTTCAGGATCATTTCGCCATCAAAGAACTATACATTGCAGGCAGAAAATGCGCTAGATCAGATGGATTGGATGGAAAAGATAAATGGTGTAATTGCCTCCTTGTTGAGTGCCCAGACATTGGGAATGATGCCCTCAGCTGACTCTGAAAATAATGACGATGACTCTGCCAACAAGATTGATACCTTAGAAAGTTCTCCAAGTAATGCTTTGACTGAGAAGTCTGTTTCCAAGAATTTCACCCCCAAAAACCAATTACGTTCATCTATGAGTTTGCAGTTGCGTAGACACAGTATGAGAATTGAAAAGCCAATTGATGTTCTTAGAAAGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTCGGCATCCTTGTATGCATTGAATGTTCTGGCATTCATCGTAATCTTGGAGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGACTCCTCTGTCTTAACCATGTTTAAGTCACTGGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTCAACAAGTACTGTGCAAACTGATGATGCATCCGTTGGTTCATCCAAGGCCAACAGAGAAAAGCTATTCCACGCAAGAAAACCAGAACCTGATGATTCTATTTCATTAAAGGAGAGGTTCATTTATGCAAAGTACTCTGAGAAAATCTTTACTTGCCGGACAAAGAAAAGCCACCCGCTCCTTTTGATGGCACAAGATGTCTGGGAAAGTATCTGTGCCAATGACAAGAAAGCAGTGTACCAGCATATTGTCCAGTCAGATGTGAATGTCAATGCCATCAGTGGGCAAGCATTATCTGGTGGTTCTTTCAACGTGGCTTCAAGTAATTCAGACATACCATCTCAATGCGAAAATCAGCTGATTGAGAACATGCACCATGGTTCTAGTGTGCTTCACCTTGCATGCCTAACAGCCGACATTGGTATGGTGGAGCTGCTCCTACAATATGGGGCAGATATAAATGCTTGTGATTCAAGAGGTCGGACACCACTACATTATTGTATTGCCACAGGAAAGACTGAAGCTGCGAAAGTCCTAATTATGAGGGGGTCCAATCCACGCGTTGCAGATAAAGAAGGCAACACTCCTCTTAAGCTAGCCTCAGAAACCGGCTCTGTTGACAGTGAAATTTTGGCTCTATTGGAAAGGAGATGA 2406 0.4206 MHFAKLDDSPMFRQQLQCLEESVESLRLRCFKLYKGCRKYTEGLGEAYDGDIAFASALENFGGGNNDPHFVALGGPVMNKFTIALREISTYKELLRSQVEQLLNDRLLHIINVDIQEVKEARKRFDKASPVYDQAREKFMSLKKSTKLDIATVIEEELQNARTSFEEARFNLVGALNNIEAKKRFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFFNEILDYVQQSKESYNKEQISLYKRMEEYKKQVYQESRMSLNGPYGSPCGDSAHPFSRISNEVADIVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKQWNGPHGSNQPSAQRNSTTENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKADADQSDLRFCFRIISPSKNYTLQAENALDQMDWMEKINGVIASLLSAQTLGMMPSADSENNDDDSANKIDTLESSPSNALTEKSVSKNFTPKNQLRSSMSLQLRRHSMRIEKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGIHRNLGVHISKVRSLTLDVKVWDSSVLTMFKSLGNLFANSVWEELLCSTSTVQTDDASVGSSKANREKLFHARKPEPDDSISLKERFIYAKYSEKIFTCRTKKSHPLLLMAQDVWESICANDKKAVYQHIVQSDVNVNAISGQALSGGSFNVASSNSDIPSQCENQLIENMHHGSSVLHLACLTADIGMVELLLQYGADINACDSRGRTPLHYCIATGKTEAAKVLIMRGSNPRVADKEGNTPLKLASETGSVDSEILALLERR* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2641 801 MobiDBLite consensus disorder prediction 456 473 - -
Dod04g2641 801 MobiDBLite consensus disorder prediction 439 473 - -
Dod04g2641 801 Pfam Ankyrin repeats (many copies) 712 764 IPR002110 GO:0005515
Dod04g2641 801 CDD BAR_SFC_plant 15 215 IPR035670 -
Dod04g2641 801 ProSiteProfiles ARF GTPase-activating proteins domain profile. 497 643 IPR001164 GO:0005096
Dod04g2641 801 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 801 - -
Dod04g2641 801 SUPERFAMILY ArfGap/RecO-like zinc finger 496 635 IPR037278 -
Dod04g2641 801 CDD ArfGap 500 629 - -
Dod04g2641 801 ProSiteProfiles Ankyrin repeat profile. 743 775 IPR002110 GO:0005515
Dod04g2641 801 CDD PH_ACAP 295 432 - -
Dod04g2641 801 ProSiteProfiles Ankyrin repeat region circular profile. 710 741 - -
Dod04g2641 801 SMART ANK_2a 710 739 IPR002110 GO:0005515
Dod04g2641 801 SMART ANK_2a 743 772 IPR002110 GO:0005515
Dod04g2641 801 SMART PH_update 293 430 IPR001849 -
Dod04g2641 801 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Dod04g2641 801 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Dod04g2641 801 Gene3D Arf GTPase activating protein 477 642 IPR038508 -
Dod04g2641 801 PANTHER CENTAURIN/ARF 1 801 IPR045258 GO:0005096
Dod04g2641 801 SUPERFAMILY Ankyrin repeat 661 791 IPR036770 -
Dod04g2641 801 Pfam PH domain 294 427 IPR001849 -
Dod04g2641 801 SMART arf_gap_3 497 614 IPR001164 GO:0005096
Dod04g2641 801 SUPERFAMILY PH domain-like 203 427 - -
Dod04g2641 801 Coils Coil 227 247 - -
Dod04g2641 801 ProSiteProfiles Ankyrin repeat region circular profile. 743 775 - -
Dod04g2641 801 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Dod04g2641 801 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Dod04g2641 801 ProSiteProfiles Ankyrin repeat profile. 776 801 IPR002110 GO:0005515
Dod04g2641 801 Pfam Putative GTPase activating protein for Arf 500 635 IPR001164 GO:0005096
Dod04g2641 801 Pfam BAR domain of APPL family 6 232 - -
Dod04g2641 801 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Dod04g2641 801 Gene3D - 657 801 IPR036770 -
Dod04g2641 801 Gene3D - 285 439 IPR011993 -
Dod04g2641 801 PRINTS HIV Rev interacting protein signature 509 528 IPR001164 GO:0005096
Dod04g2641 801 PRINTS HIV Rev interacting protein signature 528 545 IPR001164 GO:0005096
Dod04g2641 801 PRINTS HIV Rev interacting protein signature 551 572 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2641 Dod-Chr4 50278047 50287010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2641 507 634 C2H2 Transcription Factor Family AT4G21160 40.310 2.05e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2641 K12489 - gmx:100792517 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2641 04 50278047 50287010 Dod09g0088 09 1208107 1216261 PCT