Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2638 ATGCCCTTGCAAATGGTGGATCAGAGAAGAGTTTCTGCCTCATCTCACCTTTTTGATGACATTTCCTTTCCTTCTTCTGAGAGGGATGTTGGATTACTGAAGTCGAAATCCAGTCATGGCCAATTCCCACAAGGAAAAAATGGGATGAGAGCATCATCTGGCAGCATGTTAAATGCTTCATCACCCCTTGAAATAAATGCAAAATCTGGCTTGCCTATGTCACAAACTAGTCTATCCATGGCAAGTATAGAAAAGTTACATGTTGGTGGTGGAGAAGGCATTGTTGATGTGTTGAATGATTCCAAGAAATCATCACATTATCATCCCAGATCATGGTCTGATGCATGTATGCATCTAGCACCTACCTCATCTGGTTCGATGGTGAACAAGATCATTGCCAATGCTGTCACTTGTGAAAGTAGTCTATTCTCAAGCTCACTGTCTGATATATTTAGCCAAAAGTTGAGGTTATTGGGGAATGATGTACTGCCTGATAAGCCCATTGCTGTTGGTTCCCTTCCAGAGGAAGAGCCTTATAAATCTCTTGAAGAAATGGAGGCAGAAACTATAGGCAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATACAGTAACCATGCCAAAACAAATGATGACTTGGAAGATGTTGATTTATTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAACATGTGAGTCCAGGAGTAAGAACTAGTAGTCTGGATGGAGATTCAGGTTTCTTTGGAGGTTCTAAAGGAAAGTTTCCTTTTGTCGAACAACCTTCTAGAACACTCTTTGTTAGAAACATTAACAGCAACGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATTAGAACCATTTATACAGCCTGTAAGCATCGTGGGTTCGTTATGATTTCTTATTATGACCTAAGGGCTGCACAAAATGCAATGCAAGCACTTCAAAATTGGCCATTGATGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCCGAGAAGGATATTAGCCATGGTGCGCTGATGCTATCCGGTGCTGATTCATCTATTTTAAATGATGAACTCGAAAAGATCTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCCGAAATGAATCAGCACAAGTTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCACCCTAGTCTGATGCAGCAGTCTCATAAGGGGCAAGATGAACCAGATCTTGGTCAAAGTATCATTGACAACTTATCATTGAGACAAAAGGGAACTCTGTCTTCTGGCGTAATTGGATCTGGGTCCTTGGAAAATGGTTATACTCAGGGATTTCAATCTGCAATGCGGCAACCTTTGAATGCTTTTACAGCTGATAATGCATTCTTTCATATGAATTCCAGCATTCACAATACAATGAGGGGGGCATCTGTGGCAAAAGTGCCTGGTGTTTCAGAGTCAGGTAACTTTGTTGATTCAATGAAACTTGCATCTAGTCAGAGATTTCATCCTCATTCTTTGCCCGAGTATCATGATACTCTAGCCAATGGTAGTCCTTTTAACTTCTCAAGCACCATTAGCAACATGGCCAGCACTATTCTTACTGGAGTGACAGAAGCCTCTGACGGCAGGCCCATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGATATTAATGCAGGAGGAAATGGGATCCGCCCACATCATGGACTTTATAACATGTGGAACAGCTCCAATTTGCATCAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTTCTCCGGGCCTCCCACAGATGTCAAACTTTGCTAGAACACCTCCTCATATGCTGAGGACGCCACATATGGACCATCATGTTGGATCAGCACCTGTGGTTACGGCCTCACCCTGGGAAAGGCAACATTCTTACTTGGGAGAGTCTCCTGAAGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGCCTTTCATGGTTCCTGGCAATTGCATCCACCAGAATTTTCTTCTCCCATTTTTTCTCATGCCGGTGGGAGTGGAACTGAACTGACGTCCAATGCTGGGCAGAATTCTCCTAAGCAGTTATCACATGTTTTTCCTGGGAGACATCCTATGACATCAATGTCAAAATTTGATTCTGCCAATGAGCGAATGAGGAACCTTTATCATCGTAGAAGTGAAGCAAACACTAACAATGCTGATAAAAAGCAATTTGAACTTGACCTAGGTCGCATTCTGCGCGGGGAAGACAGCAGAACAACACTTATGATAAAGAATATTCCCAACAAGTACACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTCGGCTATGCATTCATAAATATGATCGATCCTAGTCAAATTATCCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTGCATATGCTCGAATTCAAGGAAAAACTTCTCTTATAGCCCATTTCCAGAACTCAAGCCTGATGAATGAAGATAAACGCTGCCGCCCTATTCTCTTCCACACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCTATGGGTTCCAATATTAGAGTGAGACCTGGGAAATCTCGCACCGCTGGTAATGAAGAGATTCACAGCCAAGGGGGTCCTTCAATTTCGACAAATGGAGAAGATTCTGCTAATGGAGTTGACTCTTCACTGAACTCTTCAAAAAACTTTGACTGA 2913 0.4233 MPLQMVDQRRVSASSHLFDDISFPSSERDVGLLKSKSSHGQFPQGKNGMRASSGSMLNASSPLEINAKSGLPMSQTSLSMASIEKLHVGGGEGIVDVLNDSKKSSHYHPRSWSDACMHLAPTSSGSMVNKIIANAVTCESSLFSSSLSDIFSQKLRLLGNDVLPDKPIAVGSLPEEEPYKSLEEMEAETIGNLLPDEDDLFSGVVDELGYSNHAKTNDDLEDVDLFSSGGGMELEGDEHVSPGVRTSSLDGDSGFFGGSKGKFPFVEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNWPLMSRKLDIHYSIPKVNAPEKDISHGALMLSGADSSILNDELEKIFGFYGEIKEIYEYPEMNQHKFIEFYDVRAAEAALRALNRIGIAGKQIKLEPGHPSLMQQSHKGQDEPDLGQSIIDNLSLRQKGTLSSGVIGSGSLENGYTQGFQSAMRQPLNAFTADNAFFHMNSSIHNTMRGASVAKVPGVSESGNFVDSMKLASSQRFHPHSLPEYHDTLANGSPFNFSSTISNMASTILTGVTEASDGRPIQGMGSTGNLADINAGGNGIRPHHGLYNMWNSSNLHQQPSSSTMLWQKTPSFVNGACSPGLPQMSNFARTPPHMLRTPHMDHHVGSAPVVTASPWERQHSYLGESPEASGFRLGSLGSGAFHGSWQLHPPEFSSPIFSHAGGSGTELTSNAGQNSPKQLSHVFPGRHPMTSMSKFDSANERMRNLYHRRSEANTNNADKKQFELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPSQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKTSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGSNIRVRPGKSRTAGNEEIHSQGGPSISTNGEDSANGVDSSLNSSKNFD* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2638 970 SUPERFAMILY RNA-binding domain, RBD 796 880 IPR035979 GO:0003676
Dod04g2638 970 SMART rrm1_1 357 425 IPR000504 GO:0003723
Dod04g2638 970 SMART rrm1_1 272 340 IPR000504 GO:0003723
Dod04g2638 970 SMART rrm1_1 796 872 IPR000504 GO:0003723
Dod04g2638 970 MobiDBLite consensus disorder prediction 34 57 - -
Dod04g2638 970 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 970 - -
Dod04g2638 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Dod04g2638 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Dod04g2638 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 970 - -
Dod04g2638 970 MobiDBLite consensus disorder prediction 936 970 - -
Dod04g2638 970 Pfam RNA recognition motif 2 794 890 IPR007201 -
Dod04g2638 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Dod04g2638 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 423 IPR000504 GO:0003723
Dod04g2638 970 CDD RRM3_MEI2_like 797 882 IPR034454 -
Dod04g2638 970 MobiDBLite consensus disorder prediction 722 751 - -
Dod04g2638 970 CDD RRM1_MEI2_like 270 345 IPR034453 -
Dod04g2638 970 Gene3D - 265 354 IPR012677 -
Dod04g2638 970 MobiDBLite consensus disorder prediction 37 57 - -
Dod04g2638 970 MobiDBLite consensus disorder prediction 905 970 - -
Dod04g2638 970 Gene3D - 355 447 IPR012677 -
Dod04g2638 970 MobiDBLite consensus disorder prediction 722 738 - -
Dod04g2638 970 SUPERFAMILY RNA-binding domain, RBD 268 427 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2638 Dod-Chr4 50237888 50247926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2638 268 422 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 9.47e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2638 - - gmx:106798747 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2638 04 50237888 50247926 Dod09g0083 09 1132722 1139363 PCT