LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2634	ATGGATCCCGACCCATTCACCTTCACCCTATTCAAGTGGGACCCACGAAGCGTCCTTCCTACCGCTACACCTGCCCGCCCGCCGTTCCTGGACTACACGGTGGCTCCGGCGCCAGTGAGAGAGCCGAGGGAGCAGCTGCTAGTGCTAGGTGGGCTGGAGGAGCTGTTCCAAGCTTACGGCGTGAGGTACTACACGGCGGCGAAGGTGGCGGAGCTTGGGTTCACGGCGAGCACCCTGGTGGACATGAAGGAGGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGATGGGATCTCCTCGTCGGGGAGCGCTATGGCATCAAAGCTGCCGTCAGAGCCGAGCGAAGGCGCATTGACGAACAAGAAACGATCCGGCGCCGCAACATTCTTCTCTCCGTCGACACCACCAACGCACTTGATGCTCTCTCTCAAGAAGGGTTGTCTGAGGAACCGGTGGTGCGACAAGAAAAAGAGGAGCCAGGGAGCACGTGGGAGGTGGTTGCTGCGGGGGAGAGGAGAAGGAAGCAGCAACAGAGTAGGAGGACGAGGAGAACGAGAATGAAAATGAGTCATCGTCATCATCGTGAGAATGGAGACCGGCCTGAAGGCGATGATGACGGAGAAGAAGATGATGATGAGGAAGTGAACAATGACAGTGGTGGTGAGAGGCAAAGAGAGCACCCGTTCATTGTGACGGAGCCTGGGGAGGTGGCACGTGGCAAGAAGAACGGCCTCGATTATCTATTCCATCTCTACGAGCAATGCCGTGAGTTCTTGATCCAGGTTCAGAACATCGCCAAGGAACGCGGTGAAAAATGCCCCACCAAGGTGACAAACCAGGTGTTCAGGCACGCGAAGAAGGCAGGGGCGAGCTACATCAACAAACCGAAGATGCGACACTACGTGCACTGTTATGCGCTGCACTGTCTTGACGAGCAAGTGTCGAATGAGCTGAGGAGGGAGTTCAAGGAGAGAGGGGAGAACGTTGGGGCGTGGAGGCAAGCATGTTACAAGCCTCTCGTGGCCGTAGCAGCGCTCCAAGATTGGGACATTGACGCCATCTTCAATGCGCACCCTCGTCTTTCCATTTGGTACGTTCCAACCAAGCTACGTCAGCTTTGTCACGCCCACAGGAACACCAACGCCGCCGCTTCCGCTTCAACCTCTGTCTCTCTCTCTCCCCCCACCTCTCTCCTTCCCTTCTAG	1215	0.5679	MDPDPFTFTLFKWDPRSVLPTATPARPPFLDYTVAPAPVREPREQLLVLGGLEELFQAYGVRYYTAAKVAELGFTASTLVDMKEEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDEQETIRRRNILLSVDTTNALDALSQEGLSEEPVVRQEKEEPGSTWEVVAAGERRRKQQQSRRTRRTRMKMSHRHHRENGDRPEGDDDGEEDDDEEVNNDSGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRHAKKAGASYINKPKMRHYVHCYALHCLDEQVSNELRREFKERGENVGAWRQACYKPLVAVAALQDWDIDAIFNAHPRLSIWYVPTKLRQLCHAHRNTNAAASASTSVSLSPPTSLLPF*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2634	404	MobiDBLite	consensus disorder prediction	205	220	-	-
	Dod04g2634	404	Gene3D	Protein LEAFY	222	391	IPR038276	-
	Dod04g2634	404	MobiDBLite	consensus disorder prediction	145	233	-	-
	Dod04g2634	404	Pfam	Floricaula / Leafy protein SAM domain	49	125	IPR035079	-
	Dod04g2634	404	PANTHER	PROTEIN LEAFY	1	392	IPR002910	GO:0003677\|GO:0006355
	Dod04g2634	404	Pfam	DNA Binding Domain (C-terminal) Leafy/Floricaula	221	385	IPR035209	GO:0003677
	Dod04g2634	404	Coils	Coil	402	404	-	-
	Dod04g2634	404	MobiDBLite	consensus disorder prediction	179	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2634	Dod-Chr4	50189442	50191816	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g2634	1	383	Orphan Transcription Factor Family	AT5G61850	62.500	3.02e-152	435

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LFY	Dod04g2634		C_LFY_FLO	4.1e-106	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2634	-		-	gsj:114416001	558.14