Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2608 ATGTCGAAATCGGGCAGCACGGCGGCGGCGACGTTGCCGTTGAAGCCAGCGTGGGTTCTGCCGCACCGAACCCCGAAGCTGACGGAGCTCTACACGGTGGGCAGGAAGCTGGGGCAGGGTCAATTCGGGACAACGTTCCTCTGCACGGAGAAGTCCACGGGGCGCACCTACGCCTGCAAGTCGATCCCGAAGCGGAAGCTGTTCTGCAAGGAGGACTACGAGGATGTTTGGAGGGAGATTCAGATAATGCACCACTTGTCGGAGCACCCTAACGTGGTCCGAATCCACGGCACCTACGAGGACCCTTATGCTGTCCACCTCGTCATGGAGCTCTGCGAGGGTGGTGAGCTCTTTGATAGGATCGTGCAGAAGGGGCATTACAGCGAGAGGCAGGCCGCGAAGCTGATAAAGACCATTGTCGAAGTTGTTGAGGCTTGTCACTCTCTTGGGGTTATGCATAGGGACCTCAAGCCTGAGAACTTCCTTTTCGATAGTGTTGACGAGGATGCTAAGCTCAAAGCCACCGATTTCGGCTTGTCTGTCTTCTACAAGCCTGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATACTATGTCGCCCCAGAGGTCTTGCGCAAGCACTATGGACCTGAATCAGATGTGTGGAGTGCTGGGGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAGCCCGGGATCTTCCGACAGATTTTACTAGGAAGACTTGATTTTCAGTCTGAGCCGTGGCCCTGCATTTCAGACAGTGCTAAGGACCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTGCGCCACCCTTGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCAGTTCTATCACGTCTGAAGCAGTTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTGTTATTGCCGAGAGGCTCTCTGAGGAAGAAATTGGTGGCCTGAAGGAGTTATTCAAGATGATTGACACTGACAACAGTGGAACCATCTCATTTGATGAGTTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTCATGGAGTCTGAAATCAAGGATCTGATGGATGCAGCTGATATTGATCATAGTGGGACAATTGATTATGGTGAATTCATTGCTGCCACTGTTCATTTAAATAAGTTGGAGAGAGAGGAAAACCTGATGTCAGCGTTCTCCTATTTTGACAAAGATGGCAGTGGATACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGATGATGTACATATTGATGAAATGATCAAGGAAATAGACCAGGACAACGATGGACAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGAAATGGAGGGATAGGAAGGCGAACCATGAGAAAAACACTGAATTTCAGAGATGCTCTTGGATTAGGCAATGGGTCCAATCAAGTTATTGATGGTCACCTTTAG 1512 0.4775 MSKSGSTAAATLPLKPAWVLPHRTPKLTELYTVGRKLGQGQFGTTFLCTEKSTGRTYACKSIPKRKLFCKEDYEDVWREIQIMHHLSEHPNVVRIHGTYEDPYAVHLVMELCEGGELFDRIVQKGHYSERQAAKLIKTIVEVVEACHSLGVMHRDLKPENFLFDSVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGRLDFQSEPWPCISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTISFDELKEGLKRVGSELMESEIKDLMDAADIDHSGTIDYGEFIAATVHLNKLEREENLMSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDEMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNFRDALGLGNGSNQVIDGHL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2608 503 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Dod04g2608 503 CDD EFh 409 468 IPR002048 GO:0005509
Dod04g2608 503 Gene3D Transferase(Phosphotransferase) domain 1 118 329 - -
Dod04g2608 503 Gene3D - 330 401 - -
Dod04g2608 503 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2608 503 SUPERFAMILY Protein kinase-like (PK-like) 12 312 IPR011009 -
Dod04g2608 503 Pfam Protein kinase domain 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2608 503 CDD STKc_CAMK 31 288 - -
Dod04g2608 503 Gene3D - 402 500 - -
Dod04g2608 503 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Dod04g2608 503 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2608 503 ProSiteProfiles EF-hand calcium-binding domain profile. 442 473 IPR002048 GO:0005509
Dod04g2608 503 Pfam EF-hand domain pair 406 468 IPR002048 GO:0005509
Dod04g2608 503 Pfam EF-hand domain pair 337 397 IPR002048 GO:0005509
Dod04g2608 503 CDD EFh 337 396 IPR002048 GO:0005509
Dod04g2608 503 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Dod04g2608 503 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 481 - -
Dod04g2608 503 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Dod04g2608 503 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Dod04g2608 503 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Dod04g2608 503 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Dod04g2608 503 Gene3D Phosphorylase Kinase; domain 1 33 117 - -
Dod04g2608 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Dod04g2608 503 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Dod04g2608 503 SUPERFAMILY EF-hand 328 469 IPR011992 -
Dod04g2608 503 PANTHER BNAA09G05220D PROTEIN 17 481 - -
Dod04g2608 503 SMART efh_1 442 470 IPR002048 GO:0005509
Dod04g2608 503 SMART efh_1 336 364 IPR002048 GO:0005509
Dod04g2608 503 SMART efh_1 372 400 IPR002048 GO:0005509
Dod04g2608 503 SMART efh_1 408 436 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2608 Dod-Chr4 50007525 50013284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2608 13 491 EF-hand Containing Proteins AT1G35670 79.089 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dod04g2608 Pkinase 1.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2608 K13412 - gmx:100806678 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2608 04 50007525 50013284 Dod04g2608 04 50007525 50013284 ECH