Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2605 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAGGAAGATGAGCGCCTCATCAACTACATCAAGGTTCATGGTGAGGGCTGTTGGAGATCTCTCCCCAAAGCAGCAGGGTTGCTTAGATGTGGAAAGAGTTGCAGACTCAGATGGATAAATTACCTGAGACCTGATCTCAAGAGAGGAAACTTCACTGAAGAAGAAGATGAACTCATCATTAACCTCCACAGCTTACTCGGAAACAAATGGTCTCTAATAGCTGCGAGGTTACCGGGAAGAACGGATAACGAGATAAAGAACTACTGGAACACACACATCAAGCGTAAACTCTATAGCCGTGGAATCGACCCCCAAACCCATCAACCACTCAACGGTGCCACTGCCACACCTTCCACCACTACAACCACAACAACAACAGCAGCAGTTCCAGTTCCAGTTCCACCCAATAACAGTACTGCAGCAATAGTTGTACCTGCAGTCACCACCACCACAACAAAGAAGAGAACTAACAATGACATCACCAATAATACCAGCATCAACAACAACAACGATAGCAGTTTTCAGCTATTTGGTGTTGCTTATGCCAATACAAACACATTGAAGGTAACTGACTCATCAGCCGGTGATGAAGACTCAAACAGCAGCAGTGGCGTCACCACAGAGGAAGCATATCCTCAACTCAGCTTGGACCTTTCTTTAGGCCCTCCCTCTCTTCATGTTTCCTCAATCAACTTGAAACGACAGCGTCAAGAGCAGCAACAACAACAACAACAAATTTTTTACCACCCGTGGTATGGGCAAGGTGTAGTGTGCGCGTGTCACAGCCTAGGGTTTCAAAGTGACCAAGCTTGTTTTTGCAAAGCCAAGAGTGCTGCTACTTCAGTTACAACACCTGCAACCGACAGTAGTAGTAATAATAATAACAATGTGTATAGATTTTACTAA 963 0.4507 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHQPLNGATATPSTTTTTTTTAAVPVPVPPNNSTAAIVVPAVTTTTTKKRTNNDITNNTSINNNNDSSFQLFGVAYANTNTLKVTDSSAGDEDSNSSSGVTTEEAYPQLSLDLSLGPPSLHVSSINLKRQRQEQQQQQQQIFYHPWYGQGVVCACHSLGFQSDQACFCKAKSAATSVTTPATDSSSNNNNNVYRFY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2605 320 CDD SANT 69 112 IPR001005 -
Dod04g2605 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod04g2605 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod04g2605 320 CDD SANT 16 61 IPR001005 -
Dod04g2605 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod04g2605 320 Gene3D - 69 135 - -
Dod04g2605 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 266 - -
Dod04g2605 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod04g2605 320 MobiDBLite consensus disorder prediction 209 229 - -
Dod04g2605 320 MobiDBLite consensus disorder prediction 121 153 - -
Dod04g2605 320 SMART sant 13 63 IPR001005 -
Dod04g2605 320 SMART sant 66 114 IPR001005 -
Dod04g2605 320 PANTHER TRANSCRIPTION FACTOR MYB7 1 266 - -
Dod04g2605 320 MobiDBLite consensus disorder prediction 123 152 - -
Dod04g2605 320 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Dod04g2605 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod04g2605 320 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod04g2605 320 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2605 Dod-Chr4 49975544 49977350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2605 1 141 MYB Transcription Factor Family AT4G38620 83.688 1.35e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g2605 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2605 K09422 - gmx:100808083 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2605 04 49975544 49977350 Dod04g2605 04 49975544 49977350 ECH
Dod04g2605 04 49975544 49977350 Dod09g0042 09 698698 700451 PCT