Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2588 ATGGCTACTCCTCCAGTGAACGCGTTGCCGGTAGCATACCAAGCATGGACGAGTCTTGCAGTTCCGGACTGGCTGAACAAAGGGGACAACGCATGGCAAATGGTGTCAGCCACCCTCGTTGGGATTCAAAGCATGCCCGGTTTGGTGATCCTTTACGGCAGCATAGTGAAGAAGAAATGGGCAGTGAACTCCGCTTTCATGGCGCTATATGCATTTGCAGCGGTCATCATTTGTTGGGTCACGTGGGCTTACAAGATGTCCTTTGGTGAGAAGCTCTTACCCTTTTGGGGAAAAGCTGGGCCCGCCTTGGGCCAGAAATTCCTCATCAAGCAGGCTGCGCTTCCGACAACGCCTCATAACTATGCGAACGGCACGTTGGAAACCGCTGAGATTGAGCCGTTTTACCCCATGGCTACTATGGTGTGGTTTCAGTGTGTTTTTGCTGCTATTGCATTGGTTATATTGGCTGGATCTGTGTTGGCTAGGATGAGTTTCAAGGCTTGGATGATGTTTGTGCCGCTTTGGCTTACTTTCTCTTACACTATCGGTGCCTTTAGCTTGTGGGGTGGTGGATTCTTGTTCCAGTGGGGTGTTATGGACTACTCTGGTGGTTATGTCATTCACCTTTCATCTGGGATTGCTGGCTTCACTGCTGCTTATTGGGTTGGTCCAAGGTCGAAGAAGGACAGGGAGAGATTCCCTCCAAACAACGTGCTATTGACGTTGGCAGGGGCAGGGTTGCTATGGCTGGGGTGGGCAGGTTTCAACGGAGGAGACCCTTACGCGGCCAATATCGACTCATCCATGGCGGTGCTCAACACCAACGTGTGCGCCGCCACCAGCCTGCTCGTGTGGACGTGGCTTGATGTCATATTCTTCAAGAAACCCTCAGTCATTGGAGCCGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACACCCGCCGCAGGTAGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTCTATCAGGAAGTGTGCCATGGTACACCATGATGGTATTAGGCAAGAAGTTGACAATTTTCCAAATGGTGGATGACACTCTCGCTGTGTTCCACACCCACGCTGTGGCTGGCTTTCTAGGCGGCATTCTCACTGGCCTATTCGCCGAGCCCCGTCTCAGTGCACTCTTCCTTGCCGTCACAAACTCCAAAGGCGCCGTCTATGGAGGAAGCTCTGGTGGGTACCAAATCGTCAAACAAATCTTGGGGGCCTTGTTCATCATTGGATGGAACCTCGTGGCCACTTCAATCATTTGCTTGGTTGTACGCTTCATTGTTCCACTGAGAATGACAGATGAGGAGTTGCTGATTGGGGATGACGCGGTTCATGGGGAAGAAGCTTATGCTTTGTGGGGTGATGGAGAGAAACTTAGTATCTACAAAGATGACACCACCCAACATGGAGTCTTCATGGCCTCAAGTGGTGCTACTCAAGTGGTCTAA 1470 0.515 MATPPVNALPVAYQAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAALPTTPHNYANGTLETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMSFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANIDSSMAVLNTNVCAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGSLVQGWAAIVMGVLSGSVPWYTMMVLGKKLTIFQMVDDTLAVFHTHAVAGFLGGILTGLFAEPRLSALFLAVTNSKGAVYGGSSGGYQIVKQILGALFIIGWNLVATSIICLVVRFIVPLRMTDEELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTQHGVFMASSGATQVV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2588 489 TIGRFAM amt: ammonium transporter 29 457 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod04g2588 489 SUPERFAMILY Ammonium transporter 24 439 - -
Dod04g2588 489 Pfam Ammonium Transporter Family 31 457 IPR024041 GO:0008519|GO:0016020|GO:0072488
Dod04g2588 489 PANTHER AMMONIUM TRANSPORTER MEP2 17 478 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod04g2588 489 PANTHER AMMONIUM TRANSPORTER 17 478 - -
Dod04g2588 489 Gene3D Ammonium transporter AmtB like domains 10 460 IPR029020 -
Dod04g2588 489 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2588 Dod-Chr4 49755017 49760113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2588 137 476 Inorganic Solute Cotransporters AT2G38290 69.412 9.69e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2588 K03320 - gmx:100785993 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2588 04 49755017 49760113 Dod04g2588 04 49755017 49760113 ECH