Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2557 ATGGGGAGCAAAAGCGGAAAGAAAGCGATGAGCCTCAACGACAGCCATTATCGCTTCCTCCAAGACCTCTCCGCTCCTCCCAAACCCTCAGCTTATGACGATGAAACTCCCTCCAACGCCACCTCCCAACGCACAAGAACCCAACGGGAACGGGACGATACTATTCCCCAATTCTCTGCCATCACTGACTTCGACTCTCCCATCGGTCAAAACACCGCAGAGAAACTCGATTCAATCGACCTTCGACCTCCAAGCCCTACGCCAAACGAAATCCCCCAATCTTTGGGCCCAACCGTCTCCGATTCTTCCCCTAAGGAGGAGAAGAAGACGAAGGTGAAGGTGCAAGGGCGGCGGCGCCTCTGCAAACTTGCGCATTCAGATCAAAGGGATGGTGATAAGGTTAAGGTTGATGAATCCAAGTTTGACGAGCTGATCGAACTTGATTCTCCGGTTCCCGCACCCAGAAACGTGGTACAGATTGAAGAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGAATGAGTTGAGCTCGAAGTTTGAGTTGCTCTCGGTTGAGAAGAAGCGAGTGCCGAAGCAAGTGCAACCAGTTGAGGGTTCTTCAGCTTTGTTTCGAGGGAAGGAAACTTTTGAGGAAGATGAGGCTGTAGAGTATGGGAGTGCAGGGTCTTCATTTTCTCCACAGCAGGATCCCTGTGACAACTCGTCACAAGGTACTAAGAATGTTTCTACTGGTAGTGGTAGTGTTGAGTATGTGGATGTTGACTCAGATGATTCTGTTGAAGCTTGTGATCATTTTGAGCCTAAGGATGATGGCTCCATAACTTTGCCCGGGCCAAAATCCACATATAAGTTGCCTGGTAAGATTGCAAAAATGTTGTATCCACATCAGCGGGATGGATTGAAGTGGCTGTGGTCTTTGCATTGTCTGGGTAAAGGTGGAATATTGGGAGATGACATGGGACTGGGGAAAACAATGCAGATTTGTGGCTTTCTTGCTGGGCTATTTCATTCTAGAATTATTAGAAGGGCATTGGTTGTGGCCCCAAAAACCTTATTGCCCCATTGGATCAAAGAACTATCAGCGGTTGGTCTCTCTGAGAAGACAAGAGAATACTTTGGAACTAATACAAAAGCCAGAGAATATGAGCTTCAATACATACTTCAGGATAAAGGTGTTCTTTTGACAACATATGATATTGTCCGGAACAATTCCAAGTCCTTGCAGGGGGGTTATCATTTTGATGATGCGGACGGTGAAGATGGCGCGACATGGGATTATATGATCCTTGATGAGGGCCACCTTATAAAGAATCCAAGCACACAGAGAGCTAAAAGTTTGCTCGAGATACCATGTACTTATCGCATTGTCATTAGTGGTACACCACTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAAAATGCTTCTGACAGAGAGAAGCGCATTGGTTCATCTATAGCAAAGGAGCTAAGAGATCGTATTCAACCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATGATCAGGAAACAACTGCAAAACTTTCCCGGAAACAAGAAATCATTGTGTGGCTTCGATTGACCGGTATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTGTCAGCATTTGATGGCTCACCACTCGCTGCCCTTACGATTTTGAAGAAAATATGTGACCATCCACTTCTGTTGACAAAACGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCGATGCTAAAGCCAGAGGAGGTTAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGACACAGAAAAGTTTGAAGATGAGCATGACGTATCATGCAAAATTTCTTTTATCATGTCATTATTGGATAATTTGATCCCAGAAGGGCATAATGTGCTTATCTTTTCTCAGACCCGAAAGATGCTTAATCTTATCCAGGAATGTCTAGTATCCAAAGGTTACGACTTTTTACGAATTGATGGAACAACAAAAGCCATTGACAGACTAAGGATTGTTAATGAATTCCAAGAAGGTGTTGGGGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTAACAAGAGCAGATCGTGTAATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAACCAAAGCGTTGACCGTGCATATCGTATTGGTCAGAAGAAAGATGTTCTTGTATATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATACAAAGGAGGATTATTCAGAACTGCTACTGAACATAAAGAACAAACCCGATACTTCAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTCCCAAAAGAGGGATTTGATGTGTCCGTTACCCAACGGCAGTTGGATGAGGAGCATGATCATCAACATACAGTGGACGATACTTTCAAATCACACATAGAGTTCCTGAAAAGTCAAGGCATAGCTGGCGTTAGTCATCATAGTCTACTCTTTTCCAAAACAGCACCAGTTCAAGCTGCTCCAGAGCATGAAGTGACGAGTAATCAAAGGACTAGATATATTGGAACTTCAGTATCATCTTCTTCCAATGAGCGAATGGTTGATGGAGCTGAGTTCGCATTTAACCCTAAGGATGTCAATTTAAGCAAAAAAGGTTCTTCCCCTAGCAGTGTTGGCAAATTGACTGAGTCGGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTGTCAAATATGGCAATGGTTTCTAGATTACCGGATAGGGGGGAGAAACTAAAGAAAAGGCTTGAAGAGCTGAATTTGGAGCTGGCCACATTAAAGATGGAAGAAAGAACCGGAGCTGATTTGGATGATTTTACCGGTGAATTTCAAAGAGTGTTGAATGTATAG 3000 0.434 MGSKSGKKAMSLNDSHYRFLQDLSAPPKPSAYDDETPSNATSQRTRTQRERDDTIPQFSAITDFDSPIGQNTAEKLDSIDLRPPSPTPNEIPQSLGPTVSDSSPKEEKKTKVKVQGRRRLCKLAHSDQRDGDKVKVDESKFDELIELDSPVPAPRNVVQIEESGGKNEIRDILNELSSKFELLSVEKKRVPKQVQPVEGSSALFRGKETFEEDEAVEYGSAGSSFSPQQDPCDNSSQGTKNVSTGSGSVEYVDVDSDDSVEACDHFEPKDDGSITLPGPKSTYKLPGKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRIIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLQGGYHFDDADGEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCTYRIVISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKNASDREKRIGSSIAKELRDRIQPYFLRRLKSEVFNQDDQETTAKLSRKQEIIVWLRLTGIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVADTEKFEDEHDVSCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQECLVSKGYDFLRIDGTTKAIDRLRIVNEFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEHKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDHQHTVDDTFKSHIEFLKSQGIAGVSHHSLLFSKTAPVQAAPEHEVTSNQRTRYIGTSVSSSSNERMVDGAEFAFNPKDVNLSKKGSSPSSVGKLTESEIKDKINRLSQTLSNMAMVSRLPDRGEKLKKRLEELNLELATLKMEERTGADLDDFTGEFQRVLNV* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2557 999 MobiDBLite consensus disorder prediction 1 116 - -
Dod04g2557 999 CDD SF2_C_SNF 644 773 - -
Dod04g2557 999 Coils Coil 959 979 - -
Dod04g2557 999 PANTHER SNF2/RAD54 FAMILY MEMBER 269 890 - -
Dod04g2557 999 Pfam Helicase conserved C-terminal domain 650 762 IPR001650 -
Dod04g2557 999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 480 IPR014001 -
Dod04g2557 999 Pfam SNF2-related domain 308 600 IPR000330 GO:0005524|GO:0140658
Dod04g2557 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 844 IPR027417 -
Dod04g2557 999 Gene3D - 552 850 IPR027417 -
Dod04g2557 999 PANTHER OS04G0692700 PROTEIN 269 890 - -
Dod04g2557 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 530 IPR027417 -
Dod04g2557 999 SMART ultradead3 288 491 IPR014001 -
Dod04g2557 999 MobiDBLite consensus disorder prediction 221 248 - -
Dod04g2557 999 MobiDBLite consensus disorder prediction 59 73 - -
Dod04g2557 999 MobiDBLite consensus disorder prediction 215 248 - -
Dod04g2557 999 SMART helicmild6 679 762 IPR001650 -
Dod04g2557 999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 653 812 IPR001650 -
Dod04g2557 999 Gene3D - 279 551 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2557 Dod-Chr4 49471826 49479798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2557 648 816 RAD5 or RAD16-like Gene Family AT5G22750 34.320 1.24e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod04g2557 SNF2_N 1.4e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2557 K20093 - gmx:100779283 1464.51