Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2551 ATGGAAGATGAGAGCCATAGCAGTTTACCAAATGGGTTCACCACAGGAAGCCCTGAAAGTCCTTGCTTAAAGACAAGCAATCACAATAACAACAACAGCAGCAGCAATAACCACAATAGCAACAAAGAACAGGATCGCTTTCTCCCCATAGCCAATGTGGGCAGAATCATGAAAAAAGTGATCCCTGCAAATGGGAAGATCTCAAAGGATGCAAAAGAGACAGTTCAAGAGTGTGTATCAGAGTTCATAAGCTTTGTCACTGGGGAAGCATCTGACAAATGTCAAAGAGAGAAGAGGAAGACCATCAATGGGGACGATATCATTTGGGCTATAACAACCTTAGGCTTTGAGGATTATGTGGAACCATTAAAATCTTACCTCCAGAAGTATAGAGAGATAGAAGGAGAAAAGCCTAACATTCCAAAGCAACAGCGTTCTGAACAAAGGCTACACCAACATCATCAGCATCACCACCATAGCCAAGACGAAAATAATCGACCACTAAGTAGTGTATATTCCTCAACAAATCTCATTTCTCAGCCTCCTTATGTAACCACTGATCATCAACCATTCTCACTACCATTCTCCCCAAATTCAATTCAGAAACAGTTACGGCCGCAAGACCAGATTGATTCAGTGGGGCATTGGTATGAGTAA 657 0.4201 MEDESHSSLPNGFTTGSPESPCLKTSNHNNNNSSSNNHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYREIEGEKPNIPKQQRSEQRLHQHHQHHHHSQDENNRPLSSVYSSTNLISQPPYVTTDHQPFSLPFSPNSIQKQLRPQDQIDSVGHWYE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2551 218 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod04g2551 218 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Dod04g2551 218 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Dod04g2551 218 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Dod04g2551 218 Gene3D Histone, subunit A 34 169 IPR009072 GO:0046982
Dod04g2551 218 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Dod04g2551 218 MobiDBLite consensus disorder prediction 134 148 - -
Dod04g2551 218 MobiDBLite consensus disorder prediction 134 218 - -
Dod04g2551 218 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 207 - -
Dod04g2551 218 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 207 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod04g2551 218 MobiDBLite consensus disorder prediction 165 208 - -
Dod04g2551 218 SUPERFAMILY Histone-fold 44 156 IPR009072 GO:0046982
Dod04g2551 218 MobiDBLite consensus disorder prediction 7 45 - -
Dod04g2551 218 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2551 Dod-Chr4 49380993 49381649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2551 42 216 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.204 4.53e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod04g2551 CBFD_NFYB_HMF 3.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2551 K08065 - gmx:100778216 333.954