Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2542 ATGGCAGGTGGAAGCATCAACATGCCTCCTGGGTTTTGCTTCTCTCCAACGGATGAAGAACTCATCGCTCACTTCCTCTATTCCAAGGCTTCTCTACCATTCTATCCCAACATCATACCTGATCTTGATCTGTCTCAGCTTGATCCATGGCAATTAAATGGTAAGGCTTTTTCTAGTGGAAATCAGCACTATTTCTTCACCAAAATGAAGGAAAACAGGACCACTGAAAATGGTTATTGGAAGGAAATAGGTGTCACCAAACCTATATTCTCAGCCGCAGACACGAAAGTGGGAATCAAGAAGTACTTGGTGTTCAACCTTGGGGAAGCTCCACAAGGCACTGAAACAAGTTGGGTCATGCAAGAGTATCATATTTGCTCAGCTGGCTTTAACACTGCATGTTATGCAAGTACTTGGGGAAGACTAAAGCCTGACCGGAGCAAATGGGTTTTATGCAGAGTGTATGAAAAGAAGAGGTCTCAATCTCAACAAGGTGCAAACTACTATAGTGATGCCGATGAGGATGACAGTGGAACCGAGCTTTCATGGCTAGATGAGGTTTATCTGTCACTAGATGATGATCTTGAAGAAATAAGCCTGCCTAATTGA 609 0.4335 MAGGSINMPPGFCFSPTDEELIAHFLYSKASLPFYPNIIPDLDLSQLDPWQLNGKAFSSGNQHYFFTKMKENRTTENGYWKEIGVTKPIFSAADTKVGIKKYLVFNLGEAPQGTETSWVMQEYHICSAGFNTACYASTWGRLKPDRSKWVLCRVYEKKRSQSQQGANYYSDADEDDSGTELSWLDEVYLSLDDDLEEISLPN* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2542 202 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Dod04g2542 202 Pfam No apical meristem (NAM) protein 9 125 IPR003441 GO:0003677|GO:0006355
Dod04g2542 202 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 199 - -
Dod04g2542 202 ProSiteProfiles NAC domain profile. 8 157 IPR003441 GO:0003677|GO:0006355
Dod04g2542 202 PANTHER NAC TRANSCRIPTION FACTOR 56 4 199 - -
Dod04g2542 202 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2542 Dod-Chr4 49257661 49258875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2542 4 161 NAC Transcription Factor Family AT1G61110 40.588 7.80e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod04g2542 NAM 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2542 - - gmx:100779578 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2542 04 49257661 49258875 Dod04g2542 04 49257661 49258875 ECH