Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2540 ATGGACGAATCTGAAATGATTATTCCTCTCTTATTCAGATGCCCTATCAGTTTAGACTTGTTAGAAGATCCTGTGACTTTGTGCACAGGCCAAACCTATGACAGGTCAAGCATAGAAAAATGGTTGGCTGCAGGTAACCTCACATGCCCTGTCACAATGCAGAAGCTCCATGATGCATCCATTGTCCCCAACCACACCCTTCGCCACTTGATACACCAGTGGCTTGAACTGGGTCCCCAATTTCACCCTGGTAGCTCTGCAACTGTAGATTCTTTAGCTGCTTTGAAGTGCACCCTTGAATCTCAAGATGCCACCATAGAGAACAAGCTCCAAGGACTTAAGAAATTAAAAGTCTTATCTGATGAGTTTTGCTCTTTTAGGAAATCATGTTTCCATGAATTGGGGTTCTTACCTCTACTTTTGGAACTAGTCTTTGGAAGAGCAGAAGCTCAAGCAGCAAAGGATGACATGAAATTCATAGAGGTGGCACTTTGTTGCATCCTAAAATTGCTGCCTCTCGGTAATTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAATTAGCAACATTTATGCTGTTATTTGAAAAAGGCACTAGCCCGGTCAAGACTAGCTTATGTCATGTCATAGAATCAGCATCATCATCTGAGACCACACAAGAGTTATGTTGTATTCTTGGAAACTCTCACAAACTAGTGCATGAGATTGTTCAAGTAGTTAGCCAAAATTGCGAGCCTTCTGAGGATGCAGTTAAGGCCATATCAGCACTATGCTCCTTGCAATCTAATAGAGAGATTCTGGTGAGAGAAGGAGCAATAGATGGGATCATAACATACATTTCATTAGGTTCTGAAAGAAGACACAAGAACTTGGCTCCGCTGGCAATACTAGAGAAACTTCTGGAGCTAGAAAGTGGTAGAGAAGCATTGGTGAATCACCCAAATGGGATTGAAGCTTTGGCGAACATGGTATTCAGGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGCTGCTTTTGATTGTTTGTGGTGATTATGGTCATGCAAGAGAGAAAGCCATTGGGGCTGGAGTTATGACTAGGTTGCTATTGCTTATGCAGAGTCATTGTGGCACCACAACAAAATCAAAGGCCAGAATGCTGCTCAAATTGCTAAAATCCAAGGGGATTGAGGAGCCAAAATAG 1188 0.4234 MDESEMIIPLLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLHDASIVPNHTLRHLIHQWLELGPQFHPGSSATVDSLAALKCTLESQDATIENKLQGLKKLKVLSDEFCSFRKSCFHELGFLPLLLELVFGRAEAQAAKDDMKFIEVALCCILKLLPLGNLEPLNMIKDESKLATFMLLFEKGTSPVKTSLCHVIESASSSETTQELCCILGNSHKLVHEIVQVVSQNCEPSEDAVKAISALCSLQSNREILVREGAIDGIITYISLGSERRHKNLAPLAILEKLLELESGREALVNHPNGIEALANMVFRVSDQECSESAVELLLIVCGDYGHAREKAIGAGVMTRLLLLMQSHCGTTTKSKARMLLKLLKSKGIEEPK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2540 395 Gene3D - 90 390 IPR011989 -
Dod04g2540 395 PANTHER WDSAM1 PROTEIN 6 389 IPR045185 GO:0061630
Dod04g2540 395 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Dod04g2540 395 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Dod04g2540 395 CDD RING-Ubox_PUB 12 54 IPR045210 -
Dod04g2540 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 78 IPR013083 -
Dod04g2540 395 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Dod04g2540 395 SUPERFAMILY RING/U-box 8 76 - -
Dod04g2540 395 PANTHER OS02G0542800 PROTEIN 6 389 - -
Dod04g2540 395 SUPERFAMILY ARM repeat 113 373 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2540 Dod-Chr4 49239779 49241562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2540 8 371 U-box Gene Family AT3G19380 30.000 3.61e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2540 - - gmx:100815247 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2540 04 49239779 49241562 Dod04g2540 04 49239779 49241562 ECH