Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2536 ATGCCGACGTGGTGGGGTAAGAAGCCGTCGACTAAGAACAAGAAGCAGCACGAGGAGGAGGAAGATGATGATGAGCCACGTGGCGGCCTCAAATTCAATCTGATGAGATCGCCGATTAGCCTCGTGAAAGGGAACAACAGTAGCAAGAAGGGGAAGGAGAAGCCTAGGAGCTTCGACGAGCTGTTCTCGGCTAGGAATTCGCCGTCGCCGAGTGGGAGGACGAGCAAGGAATTCGGAAACGTGGATGGGGAGAGGAATAGAGGAGGGGTTCCGTTGCCTCGCCCTTCGGTTTCTTCGAACCACAGCTTCGGGAACGATCATGGGATTGGGGGCGGATCTGCTTCGGTGTCGGGTTCCAGCATCAGCTCCTCTACCTCATACGATGATCACCCTATCTCCCCTCAGTTCCTTTCCAACAGAGGACATGCTGATATGAAGTTCAATGTGCGGCCAAAAAGCCCAGGTACTGGGTCAAGAGGACCCACCAGCCCTACATCGCCTCTTCATCACAGGATTTTGAGTCTTGACTCTCCTACAGGCGATGGAAGGAGCGAGTGTCACCCATTGCCTCTTCCACCAGGCTCTCCTACTAGTCCTTCTGCTCTTTCCAACACACGGCCAAATGGACCGTTAGAAAACACTGCCAGTAATCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGACGGGGAACGTTCGGGCATGTTTATTCGGGATTCAATAGTGATAGTGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGACGATCCAACATCAAAAGAGTGCCTCCGACAACTTAATCAGGAGATAAACTTGCTTAATCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGAACTGGGAGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAAGAATATGGTCCCTTTAAGGAGCCTGTCATTCAAAATTATACCAGGCAGATCGTATCTGGACTTGCGTATCTGCATGCAAGAAATACTGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAACGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACTTATAAATTCTTCTGCCTCAGTGCTTTCATTTAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAACGGCTATGGCCTTCCAGTAGATATATGGAGCTTGGGATGTACAATTCTAGAAATGGCATCATCGAAACCTCCATGGAGTCAATATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATACCTGAGCATCTTTCAAATGATGCAAAGAACTTCATTAAGGAATGTTTAAATAGGGACCCATTAGCTCGCCCACCAGCCCAAAAGTTACTAGACCACCCCTTCATCCGAGATCAATCGGCAACAAAAGCTGCAAATGTCAGAATAACCAGAGATGCTTTCCCTTGCATGTTTGACGGAAGCCGGACGCCGCCTGTTTTAGAGTCTCATTCCAATCGAACAAGTATAACTTCACTTGATGGAGATTATGCAGCACGGACAGCTCTTGCAGCTTCACGTGCATTAAGGAGCCCTAGAGACAACAAAAGAACGATCACATCTCTACCAGTATCTCCCTCTTCAAGTCCATTGAGACATTATGGGGCGACACACACGAACGGGTTCTATTCTCCTCCTCATCCAAGTTACACAATGATGGGGCAAAGTAATTACACTTTGAATGACACGTCGTCATATCCAGTGAGATCAAATGCCACATTCACTCTTGATCCATGGCATGAAACATCTCGATACAGAGCCCATACGCCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1884 0.4671 MPTWWGKKPSTKNKKQHEEEEDDDEPRGGLKFNLMRSPISLVKGNNSSKKGKEKPRSFDELFSARNSPSPSGRTSKEFGNVDGERNRGGVPLPRPSVSSNHSFGNDHGIGGGSASVSGSSISSSTSYDDHPISPQFLSNRGHADMKFNVRPKSPGTGSRGPTSPTSPLHHRILSLDSPTGDGRSECHPLPLPPGSPTSPSALSNTRPNGPLENTASNLSKWKKGKLLGRGTFGHVYSGFNSDSGQMCAIKEVRVVSDDPTSKECLRQLNQEINLLNQLSHPNIVQYYGSELGEETLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKLINSSASVLSFKGSPYWMAPEVVMNTNGYGLPVDIWSLGCTILEMASSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKECLNRDPLARPPAQKLLDHPFIRDQSATKAANVRITRDAFPCMFDGSRTPPVLESHSNRTSITSLDGDYAARTALAASRALRSPRDNKRTITSLPVSPSSSPLRHYGATHTNGFYSPPHPSYTMMGQSNYTLNDTSSYPVRSNATFTLDPWHETSRYRAHTPPGGSPRMRLI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2536 627 SMART serkin_6 221 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2536 627 MobiDBLite consensus disorder prediction 542 558 - -
Dod04g2536 627 Pfam Protein kinase domain 222 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2536 627 Gene3D Transferase(Phosphotransferase) domain 1 218 496 - -
Dod04g2536 627 MobiDBLite consensus disorder prediction 1 216 - -
Dod04g2536 627 MobiDBLite consensus disorder prediction 11 30 - -
Dod04g2536 627 MobiDBLite consensus disorder prediction 93 133 - -
Dod04g2536 627 ProSitePatterns Protein kinases ATP-binding region signature. 227 250 IPR017441 GO:0005524
Dod04g2536 627 MobiDBLite consensus disorder prediction 62 76 - -
Dod04g2536 627 PANTHER MAP KINASE KINASE KINASE 1 608 - -
Dod04g2536 627 MobiDBLite consensus disorder prediction 536 558 - -
Dod04g2536 627 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 608 - -
Dod04g2536 627 SUPERFAMILY Protein kinase-like (PK-like) 218 556 IPR011009 -
Dod04g2536 627 MobiDBLite consensus disorder prediction 198 216 - -
Dod04g2536 627 MobiDBLite consensus disorder prediction 155 172 - -
Dod04g2536 627 ProSiteProfiles Protein kinase domain profile. 221 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2536 627 CDD STKc_MEKK1_plant 220 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2536 Dod-Chr4 49215776 49220286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2536 1 540 MAP Kinase Kinase Kinase AT1G53570 57.838 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Dod04g2536 Pkinase 8.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2536 K04421 - gmx:100787064 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2536 04 49215776 49220286 Dod04g2536 04 49215776 49220286 ECH
Dod04g2536 04 49215776 49220286 Dod09g1820 09 39833470 39837396 PCT