Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2524 ATGGATACCAACCACCAGCATACTAGTGCATTCACAAATGCAAACAACACTTGGAATAAGCAGAAGATAGGAACAGAAGTCCAAGATCACATCCAAATCCCTATGGCTTCTGCGATTTGGCCCAACTACCACCTTCTTCAAATGCATCAACAAGCACCATCCTCTTCTTCCACGTCCTCATCCATCATGGCACCCTCTTCATCTTCATCAGGGTTCCTTGGTGACATACTAGGCGTTCACATAGAAGAAGCAGCTGAAGAAGAACCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATAGCCGCTATGCAGCCGGTGGACATCGACCCTGCCACCATCCGAAAGCCAAAGAGGCGAAACGTTCGCATCAGCGATGATCCCCAAAGCGTGGCGGCGCGCCACAGAAGAGAGAGGATCAGTGAGAAGATTCGCATCCTCCAGAGACTTGTCCCTGGAGGAACCAAGATGGACACAGCTTCAATGCTGGATGAAGCCATTCGCTATGTGAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCCACTCCTCAAACTCAACACCCTCTTCCACAACCACCACATTGCATTGGTGTTGGTACTCTTGCTAATCCTACTACTAGCACCTTGTTATTAACCCCTGGCACTGGCGATTGGCCTTTTGCACCTAATATGTTTCATAGTTCCACCACTGCTACCACCACCGCCTCGTCCACCATGGACATGCCGGCTGGACTTGGATTCGACGCCGGAGGCCATGGCCATGTCTGTGATGGCTCCTCCAGCTTTAATCACCATGAGGTAATTAGAGAATGA 822 0.4964 MDTNHQHTSAFTNANNTWNKQKIGTEVQDHIQIPMASAIWPNYHLLQMHQQAPSSSSTSSSIMAPSSSSSGFLGDILGVHIEEAAEEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQTQHPLPQPPHCIGVGTLANPTTSTLLLTPGTGDWPFAPNMFHSSTTATTTASSTMDMPAGLGFDAGGHGHVCDGSSSFNHHEVIRE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2524 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 194 IPR036638 GO:0046983
Dod04g2524 273 CDD bHLH_AtIND_like 127 184 - -
Dod04g2524 273 Pfam Helix-loop-helix DNA-binding domain 136 175 IPR011598 GO:0046983
Dod04g2524 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Dod04g2524 273 Gene3D - 129 192 IPR036638 GO:0046983
Dod04g2524 273 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 244 IPR045843 GO:0003700|GO:0006355
Dod04g2524 273 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 244 - -
Dod04g2524 273 SMART finulus 132 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2524 Dod-Chr4 49084887 49085708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2524 95 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 76.238 7.21e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g2524 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2524 - - aprc:113856609 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2524 04 49084887 49085708 Dod04g2524 04 49084887 49085708 ECH
Dod04g2524 04 49084887 49085708 Dod09g1804 09 39625242 39626045 PCT