Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2523 ATGAGTGGAAGTGGCAGAAAGCACTCTTCAAAGAGGGATTTGAGAGATGAACCTGAATTTGCAAGGCGCAGTCGGAGCAAGAGCCCTGCAAGTGGTTTCAGGGGGGATTCAGGATTCAATGAAAGAAAAAGAATGAAGGCTGGAGGATTGGCAAAAACATGTAGAGATTTTGCTGCTGGAAAATGCAGGAGAGGCAGTCATTGCCATTTCCTTCACCATGATAAACATAATTATGAGGATGGCTGGGAAAGTAGACACATGCATGATGGAGCTCCCAGATACTCTGCTCCCCGTGAGAGCGGGGACTATTCCATTAGGAGTGGAAGATCCAATGGAGCTTGTATTAATTTTGCTAAAGGAAGGTGTAGGATGGGAGCATCATGCAAGTTTGTACATGATGACAATTCTGATGGATTCAGTGTAACTCCTGTGGGTGAATCAACCAGAGAAAGGGAAATTGATAGAAGGCGCATGGAGAATACATTAGAGCGGGGTGGTGGGCATGGTCCAAACCACAGTGGTGACATTCCTTGCAAATTTTTTGCTTTTGGAAATTGTCGCAATGGTAAACATTGCAGGTTTTCTCATGATAGGCAAGCATGTAAGAGCCCTAATAGAAGATTAAGGGATGGTATGTTGAGGAATGTTCAAGGTGGAGATCAGGCATCGGACGTACCGAAATTGAATGATGCCATTAATCCTGATGGAAGATCAAAAGATGATAGATGGGGTTCAGATAGCAGTATGGATATGGATGTAGATGAAATTTGGGATGGTCCAAAACAGAATGATTTAGTTGCTGTCTTTGATACTGCAAAGCAGGGTGAGGACAGCAGAAATGGATATATGGGTGCCCCAACGCCTGAATTCACTGGTTGGCCAACTTGTGATGGATGGGATCGTAGTTTAGATAAGAACAGAGTGCATGGTGAACCACCATTTTCAGGTGATAAGAAGGAAACCAACTGTTGGGAAGCAGAAAATGCTGTAGCCAACATGCATAGTTCTCAGCCATTAAGTACAGACATTTGGCCAGGGGATGAAAAAATGTCTCCTGATTGGAACTATGGTGTGGGATCTTCCTGCCGCATTGAAGAGAAGCGTGGACAGAATAAGCAACAAGTTCCTCCAGGACAAGGATTTAATCAGAATGCTCAGAATCCAATTGCTTCGCATTCTTCGAGCTGTCATGTGGTTGGACAAAGTCAAGTGGCAGTTTCCGTCATTCCTCCAAGAGTTGGTAGTGTTGAAGGCATGCAGAACCAGGAAATCTCTACCGAGAAAAAGTACACTGTTGAGCCCGGTATCATGGAAGCGAACCTGTTACAAGTTGGTTCAAGAAATCCTTCAACTCAGAACATGGTGAACAAAGAAAAAATTGCTCAACTAACCAGCATCTCAGCTTCTCTGGCGCATATACTTGGTTCAGTTCAGCAGCTCCCACAACTTCATGCTACATTAAACTCTCACGATGTAAGGGATACTATTACTCCCTTCCTAGGCAAAACTGAAGGGTCCAGTAAGCCTCTTGTTCCAACATTCATCAAGTCAGATCCTGCTGTTGGATTACTGAAGTGGCATGATACAATATGTGACAGTGTTGAAGCAAAAAGTGCTAATGCGAGTGTGGTCCCCCTATCCTTTTCGCCAATAAAAAAAATTTCACCAGATGCAGCAGAGATTCCCTCACTGTTGTCTAACTCAGGCAGACAAAATCTTGATAATTCTAGTAAAGCTGCCTCTTCTGAAGAACAACTTGTCAAGAGTGACCATCTTATTCAGTTGCAGCAAGGTGAAAACATTGAGGTTAATAAAGAGAAAGATGTAGTGGTGGCTAAAGAAAGGCAAAGTTCTCAATGTGCCAATGAAATTGTCAAAGAGAATAGTCCTGTGGAGAACTTGGACCAAAAAGGTGGACCCGATGAGGCCAAGAAAACAAAGGATGCCAAGGGTATTCGTGCATTTAAATATTCATTGGTGGAGTTTGTTAAGGAGCTTCTAAAACCAACATGGAAAGAAGGCCAAATCACCAAAGAAGATTATAAATCAATTGTGAAGAAAGTTGCCGATAAAGTAACTAGCACCGTGCAGCGGGCACATATTCCTCAGACACAAGAAAAAATTGACCACTACTTATCACTGTCGAAACCAAAGCTTAATAAACTTTTACAGAAAGAAATTTATCAAGATGAAGAAAGGAAGAGTGCAAAGATATAG 2217 0.4258 MSGSGRKHSSKRDLRDEPEFARRSRSKSPASGFRGDSGFNERKRMKAGGLAKTCRDFAAGKCRRGSHCHFLHHDKHNYEDGWESRHMHDGAPRYSAPRESGDYSIRSGRSNGACINFAKGRCRMGASCKFVHDDNSDGFSVTPVGESTREREIDRRRMENTLERGGGHGPNHSGDIPCKFFAFGNCRNGKHCRFSHDRQACKSPNRRLRDGMLRNVQGGDQASDVPKLNDAINPDGRSKDDRWGSDSSMDMDVDEIWDGPKQNDLVAVFDTAKQGEDSRNGYMGAPTPEFTGWPTCDGWDRSLDKNRVHGEPPFSGDKKETNCWEAENAVANMHSSQPLSTDIWPGDEKMSPDWNYGVGSSCRIEEKRGQNKQQVPPGQGFNQNAQNPIASHSSSCHVVGQSQVAVSVIPPRVGSVEGMQNQEISTEKKYTVEPGIMEANLLQVGSRNPSTQNMVNKEKIAQLTSISASLAHILGSVQQLPQLHATLNSHDVRDTITPFLGKTEGSSKPLVPTFIKSDPAVGLLKWHDTICDSVEAKSANASVVPLSFSPIKKISPDAAEIPSLLSNSGRQNLDNSSKAASSEEQLVKSDHLIQLQQGENIEVNKEKDVVVAKERQSSQCANEIVKENSPVENLDQKGGPDEAKKTKDAKGIRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVTSTVQRAHIPQTQEKIDHYLSLSKPKLNKLLQKEIYQDEERKSAKI* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2523 738 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 22 724 - -
Dod04g2523 738 SMART c3hfinal6 172 198 IPR000571 GO:0046872
Dod04g2523 738 SMART c3hfinal6 50 74 IPR000571 GO:0046872
Dod04g2523 738 SMART c3hfinal6 110 134 IPR000571 GO:0046872
Dod04g2523 738 Pfam RNA-binding, Nab2-type zinc finger 54 72 - -
Dod04g2523 738 Pfam RNA-binding, Nab2-type zinc finger 113 132 - -
Dod04g2523 738 Pfam CCCH-type zinc finger 177 197 IPR041367 -
Dod04g2523 738 Gene3D - 47 144 - -
Dod04g2523 738 ProSiteProfiles Zinc finger C3H1-type profile. 53 75 IPR000571 GO:0046872
Dod04g2523 738 MobiDBLite consensus disorder prediction 365 396 - -
Dod04g2523 738 MobiDBLite consensus disorder prediction 82 102 - -
Dod04g2523 738 Gene3D - 170 274 - -
Dod04g2523 738 SUPERFAMILY CCCH zinc finger 175 197 IPR036855 GO:0046872
Dod04g2523 738 MobiDBLite consensus disorder prediction 216 250 - -
Dod04g2523 738 MobiDBLite consensus disorder prediction 1 24 - -
Dod04g2523 738 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 22 724 - -
Dod04g2523 738 MobiDBLite consensus disorder prediction 233 250 - -
Dod04g2523 738 ProSiteProfiles Zinc finger C3H1-type profile. 177 199 IPR000571 GO:0046872
Dod04g2523 738 ProSiteProfiles Zinc finger C3H1-type profile. 108 135 IPR000571 GO:0046872
Dod04g2523 738 MobiDBLite consensus disorder prediction 372 396 - -
Dod04g2523 738 MobiDBLite consensus disorder prediction 1 44 - -
Dod04g2523 738 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2523 Dod-Chr4 49068061 49074552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod04g2523 zf-CCCH_4 4.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2523 - K22909 gmx:100783856 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2523 04 49068061 49074552 Dod04g2523 04 49068061 49074552 ECH
Dod04g2523 04 49068061 49074552 Dod09g1803 09 39609448 39616682 ECH