Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2522 ATGGCTTCCTTCCTCTCCCTCTCCCTCTCCCTCTCCCTCATGCTCCTCCTCTTCCTCACCCTCTCCTCCGCCACCCGCCACCAACACCACTCCCCTACCCCCACCCACAAACCACCCTCCTCCCCTGCCGCCACCACCACAGCCTCCCCTCAAATCCAGCAAGCCTGCAAGGCCACCCGCTTCCCGCAACAATGCGAGTCCACCATCTCCCAATCGCCCAACCTCCCAACCAACCCGACCCCTCTCCAGCTCCTCCAGTCCGCCATCTCCGCCTCCTCGAACAACCTCGTAACCGCCCAGTCCATGGTCAAGTCCATCCTCGACTCCTCCTCCGACAGCCGCAACCGCACCGTCGCAGCCACCAGCTGCCTCGAGGTCCTCTCCAACTCCAACCACCGCCTCTCCCTCGCCGCCGACGCCCTCCCACGCGGCAGAACCAAGGACGCCCGCGCCTGGCTCAGCGCCGCCCTCGCCTACCAGTACGACTGCTGGAACGGCCTCAAGTACGCCAACGACACCGCAAAAGTCGGCCAAACGATGTCGTTCATTGACGGGCTCACGGTCCTCTCCAGCAACGCGCTCGCCTTCGCGTTCTCGTACGACGTGTTCGGAAAAGACACGGCGTCGTGGAAGGCGCCCGCCACCGAGCGCGACGGGTTCTGGGAGGCGGCCGGGTCGGGCGGTGGCTCCGGACCAGGTTTTCCGGAGAACCTGAAGGCGGACGTTACGGTGTGCAAGGATGGGGGCAATGGGTGTTACAAGACGGTGCAGCAAGCCGTTAATGCAGCGCCGGGTAACGGCAAAGGCAACGGCGTTGGTGGGGGACGGAGGTTCGTGATATACATTAAGGAAGGCGTTTATGAAGAGACCGTTAGGGTTCCATTAGAGAAGATGAACGTGGTGTTCTTAGGGGATGGCATGGGGAAGACGGTAATTACTGGATCTGCAAACGTGGGGCAGCCCGGCATGACCACCTACAACTCTGCCACAGTCGCGGTTCTTGGGGATGGATTCATGGCAAAGGGACTCACAATCAAAAACACGGCAGGACCTGATGCTCACCAAGCAGTTGCCTTGAGACTAGACAGTGATCTTTCGGTCATTGAAAGCTGTGAGTTCATAGGAAACCAAGACACTCTGTATGCTCATTCCCTGCGCCAATTCTACAAGTCATGCCGCATCATAGGCAACGTGGACTTCATATTTGGCAACTCTGCTGCGATCTTCCAAGACTGCCAAGTCTTAGTGGCTCCCCGGCAGGTGAAGCCGGAGAAGGGCGAGAACAATGCCATCACTGCTCATGGCAGAACAGACCCTGCTCAATCAACAGGGTTTGTTTTCCAGAACTGCTTGATTAATGGCACCGAGGAATACATGGCATTGTATCACAGCAAGCCCCAAGTGCACAAGAATTACTTGGGTAGGCCGTGGAAGGAGTACTCTAGGACTGTTTTCATTCATTCATTCTTGGAAGAACTCATCACACCACAGGGTTGGTTGCCATGGAGTGGTGACTTTGCACTTAAGACACTTTACTATGGGGAGTTTGAGAATTCTGGACCAGGTTCTGATTTGTCTCAAAGGGTGCATTGGAGCAGCAAGGTGCCTGCTGATCATGTTTTGGCGTATTCAGTGGAGAATTTCATTCAAGGAAATGATTGGGATGCCTTCATCCCAGTTATTAGCACATCGTCGTAG 1698 0.5648 MASFLSLSLSLSLMLLLFLTLSSATRHQHHSPTPTHKPPSSPAATTTASPQIQQACKATRFPQQCESTISQSPNLPTNPTPLQLLQSAISASSNNLVTAQSMVKSILDSSSDSRNRTVAATSCLEVLSNSNHRLSLAADALPRGRTKDARAWLSAALAYQYDCWNGLKYANDTAKVGQTMSFIDGLTVLSSNALAFAFSYDVFGKDTASWKAPATERDGFWEAAGSGGGSGPGFPENLKADVTVCKDGGNGCYKTVQQAVNAAPGNGKGNGVGGGRRFVIYIKEGVYEETVRVPLEKMNVVFLGDGMGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKGLTIKNTAGPDAHQAVALRLDSDLSVIESCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSAAIFQDCQVLVAPRQVKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEEYMALYHSKPQVHKNYLGRPWKEYSRTVFIHSFLEELITPQGWLPWSGDFALKTLYYGEFENSGPGSDLSQRVHWSSKVPADHVLAYSVENFIQGNDWDAFIPVISTSS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2522 565 Gene3D - 235 561 IPR012334 -
Dod04g2522 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 196 IPR006501 GO:0004857
Dod04g2522 565 SMART PMEI_2 47 196 IPR006501 GO:0004857
Dod04g2522 565 SUPERFAMILY Pectin lyase-like 239 556 IPR011050 -
Dod04g2522 565 MobiDBLite consensus disorder prediction 27 53 - -
Dod04g2522 565 CDD PMEI-like_3 55 196 - -
Dod04g2522 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 41 554 - -
Dod04g2522 565 Pfam Plant invertase/pectin methylesterase inhibitor 52 195 IPR006501 GO:0004857
Dod04g2522 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 196 IPR035513 -
Dod04g2522 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 198 IPR035513 -
Dod04g2522 565 Pfam Pectinesterase 241 552 IPR000070 GO:0030599|GO:0042545
Dod04g2522 565 PANTHER PECTINESTERASE 41 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2522 Dod-Chr4 49048612 49051966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2522 39 554 Carbohydrate Esterase AT5G09760 65.900 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2522 - - adu:107480269 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2522 04 49048612 49051966 Dod04g2522 04 49048612 49051966 ECH
Dod04g2522 04 49048612 49051966 Dod09g1801 09 39603826 39605986 PCT