Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2516 ATGGTGAGAGACGATCTATGCATAACGGTTCCCAGCTTCTTCCGGTGCCCTATATCACTCGACGTGATGAAATCCCCTGTGAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGATAACGGAAACAACACCTGCCCCGCCACCATGCAGGTCCTACACAGCAAGGAATTCGTCCCCAACCGCACCTTGCAGAGGCTTATCCAGATCTGGTCCGAATCGGTCCGCCACCGAGTCGACTCGCCCGAGTCCCCCGCCGATCATGGCTCGCTCGTTTCCAACGACCAAGTCCTCTCCGCTTTCACAGCCTTGGAGTCCAGCTCCGGGGACTGGTCTGACTCGCTCGCGAGAATAGTGCGTTTCGCTCGAGATTCCGAAGGGAACCGCGATTTTCTCGCGAGGATGGGAGGCTTCGTGCCTGCGCTGGTCGGTTTCCTCCACAATGTCGACAACGGAGAGCAGCGCGGTGGCGTCGAGTTTCTCGAGCAGGTTGTCACGGCTTTGGATTTGGTTCTTGATAAAATGGAAGACAGCGAAGCTTTTAAAAACTCGATGCTCAAGAACCAGAACCAGGGCAATTGCAGTTCCTTGGATTCTCTGCTTGTCGTTTTGCGAAAAGGAAGCTCCGATTCGAGAATCGCGTCTGCTAGGGTTTTGCAATCCTTCGCCATGGACGCGGAATCGAAACTCTTGATAGCGGAAAAGGAAGGCCTAGTCTCAGAACTGCTCAACCTAATAACACAGGACAAAGATCCGGCGGTGATCGAGAACTGCTTGTCATGCCTGGTGGCAATCTCGTCGGCGAAACGGAACAAGGCAAAGCTTGTCCACCTCAAAGCCGTGAAGGCTTTCTCGAAGCTTCTGTCGGAGTCGAACCTGAGCGCCTCCGCGGCGGAGAAGGTGCTGAAGCTTCTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGACGGAGATATGCGAGGACTCGCAGTGTGTGCCAGCGATACTGAACAAGGTGCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCGGTAACGACTCTGTGGAGCGTGTGCTATCTGTTTCGTGATCAGAAGGCGCAAGAAGCGGTTACGAAGGCCAACGGCTTGACCAAGATTCTGTTACTGATGCAGAGCAATTGTTCACCCGCTGTGCGCCAAATGTCCGCAGATTTGCTTAAGATTTTCAGGGTTAATTCTAAGTCGTGTCTTTCTTGCTATGACACCAAGACCACCCATATCATGCCCTTTTGA 1266 0.5442 MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHSKEFVPNRTLQRLIQIWSESVRHRVDSPESPADHGSLVSNDQVLSAFTALESSSGDWSDSLARIVRFARDSEGNRDFLARMGGFVPALVGFLHNVDNGEQRGGVEFLEQVVTALDLVLDKMEDSEAFKNSMLKNQNQGNCSSLDSLLVVLRKGSSDSRIASARVLQSFAMDAESKLLIAEKEGLVSELLNLITQDKDPAVIENCLSCLVAISSAKRNKAKLVHLKAVKAFSKLLSESNLSASAAEKVLKLLETVSSTKEGRTEICEDSQCVPAILNKVLKVSSAATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2516 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 87 IPR013083 -
Dod04g2516 421 Gene3D - 96 404 IPR011989 -
Dod04g2516 421 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Dod04g2516 421 PANTHER WDSAM1 PROTEIN 4 421 IPR045185 GO:0061630
Dod04g2516 421 CDD RING-Ubox_PUB 14 56 IPR045210 -
Dod04g2516 421 SUPERFAMILY ARM repeat 145 408 IPR016024 -
Dod04g2516 421 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Dod04g2516 421 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 421 - -
Dod04g2516 421 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Dod04g2516 421 SUPERFAMILY RING/U-box 6 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2516 Dod-Chr4 48995008 48996662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2516 1 421 U-box Gene Family AT5G64660 54.079 5.34e-150 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2516 - - gmx:100799627 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2516 04 48995008 48996662 Dod04g2516 04 48995008 48996662 ECH
Dod04g2516 04 48995008 48996662 Dod09g1793 09 39534610 39536552 PCT