Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2512 ATGCGTGAGCCTTACATTTCATTACCTGCCATGGATGTGATGGGTTATGAGCAATTTGATTACTCATTTAGCCCTCCCCACTTGAATCAGCTCCATGAATGTAGCTTATTAGAAAATGCATTCCCATTCCAAGCAGATGATCTCTTATCTCCAAATAACATCCATGATGAAATGTTTGACCAAGAGTTTGTAGATGGATTCCTCCATCCACACTCACAGTTCCTGGACCTCGATTCCCTGAATAATCATGATGTTACAATGGGTATTGGGTCTGAATTGTCTCATGAAGTGACCCCTATATCCCAAGAAAACGTGTATGTCTCAATGGAATTAGGGGATGCATATTTGAGGGGCATTCAAGCAGAGCTAATGGAAGAGACCAGTTTATCTGATCTCTTGCTGACAGCTGCTGAAGCCGTTGAAGCACAGAACTGGGGTCTTGCTTTGAACACATTAGAGAAGCTTAACAATAATGCCTCACGTTTAGAAAATGGGGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTGCTCAGGGTCTGTATTATAAGAGTATTAATGCCCCTAAAGTGCGGTGTGATCCTATTTCCATACAGACAAATGCTTTCTGTGTGTTCCAGATACTTCAGGAACTCTCTCCCTACGTAAAATTTGCTCATTTCACTGCCAACCAAGCGATCTTTGAAGCCGCAGAAGGTGCTGAGGATGTTCATGTCATTGATTTTGACATCATGGAGGGGATCCAGTGGCCACCATTGATGATGGACCTTGCAATGAGGAAGAACACTTCCCTTAGAGTAACAGCCATCGTTTCAGACCATCAGAGTGCAGCCTATGTTCAACAAACAGGAAGAAGGCTAAAGGAGTTTGCAGATTCTATCAATTTTCCATTCACTTTTGATCAGATAATGATGGTGGGGGGAGAAGATTTCCAAAGGGTTGAAGTTGGTCACACACTAATAGTCAACTGTATGATACACCAGTGGATGCCAAACAGGAGTTTCTCTTTGGTCAAAACTTTCCTTGATGGCGTAAGCAAGTTATCGCCGAGGCTTGTTGTCTTAGTGGAAGAAGAATTGTTTAATTTTTCTAGACTTAAATCCATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCACCACTACACTGCACTATCTGATTCACTTGCTAGCAGTTTGTGGGGTAGCCACAAGATGGAGTTAGCCCTGATAGAAAAAGATGTTCTAGGCCTGAGGATTCTAGACAGTGTGAGGCAGTTTCCTTGTGTAGGAGAGGAGAGAATGTTGTGGGAAGAAGGATTTTATTCCTTGAAGGGGTTTAAACGAGTTCCTATGAGTAGCTGTAATATTTCACAGGCCAAGTTTTTGGTGAGCCTGTTTGGGGGAGGGTATTGGGTGCAATTCGAGAAGGGTAGGTTGTCTGTGTGTTGGAAGTCAAGGCCTTTGACATCGGCTTCAATTTGGGTACCAACAACTTATCTGAGTAACAGGGCCAAATAA 1497 0.4282 MREPYISLPAMDVMGYEQFDYSFSPPHLNQLHECSLLENAFPFQADDLLSPNNIHDEMFDQEFVDGFLHPHSQFLDLDSLNNHDVTMGIGSELSHEVTPISQENVYVSMELGDAYLRGIQAELMEETSLSDLLLTAAEAVEAQNWGLALNTLEKLNNNASRLENGDSLLNRLALFFAQGLYYKSINAPKVRCDPISIQTNAFCVFQILQELSPYVKFAHFTANQAIFEAAEGAEDVHVIDFDIMEGIQWPPLMMDLAMRKNTSLRVTAIVSDHQSAAYVQQTGRRLKEFADSINFPFTFDQIMMVGGEDFQRVEVGHTLIVNCMIHQWMPNRSFSLVKTFLDGVSKLSPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYTALSDSLASSLWGSHKMELALIEKDVLGLRILDSVRQFPCVGEERMLWEEGFYSLKGFKRVPMSSCNISQAKFLVSLFGGGYWVQFEKGRLSVCWKSRPLTSASIWVPTTYLSNRAK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2512 498 PANTHER OS12G0162700 PROTEIN 16 488 - -
Dod04g2512 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 488 IPR005202 -
Dod04g2512 498 Pfam GRAS domain family 130 487 IPR005202 -
Dod04g2512 498 ProSiteProfiles GRAS family profile. 120 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2512 Dod-Chr4 48939287 48940783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2512 129 487 GRAS Transcription Factor Family AT5G41920 34.316 1.96e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod04g2512 GRAS 2.3e-75 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2512 - - gmx:100804613 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2512 04 48939287 48940783 Dod04g2512 04 48939287 48940783 ECH