Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2510 ATGTATGCTTCTACTTCCTTTACTTCACATCTCGTTCATGAACTTCTTGTGGACTCCCACTCGAGAAGGCTACTGATGCTTCCAAACCCACTTCACCAAACCCCCAATTCCCCATCACCTTCCACCACAAACACCCACAATTCAACAGATTTATACCTCGGAGATGGTGCCTTTGATGCTAACGTTGTCATGGTACTCTCGGTGTTACTTTGTGCTCTTGTTTGCTCACTTGGGTTGAACTCCATCATACGGTGTGCGTTGAGGTGTTCAGATTTAGTGATCAACGACTCTTCCTCCAGCAACAGCAGCAACAATAGCCCTTCACCTCGATTGGCCAACAAGGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCAACCTTAAGCTACTCTCCTGAGTTGAGACTCCCAGGTTTGGACACCGAGTGTGTTATATGCCTCTCGGAGTTTTCCAATGGTGATAAAGTGCGTGTTCTGCCAAAGTGTAACCATGGTTTCCATGTCCGTTGCATCGATAAGTGGCTGAGTTCACACTCATCTTGCCCCAAGTGCAGGCAGTGCCTCATTCACACTTGCCAAAAGATTGTTGGAACACAACCACCACCTGCAGTGCAGCCAGTGTCAGAAACTATTATAAGGATTGAACCACTAGAGCCAGAAGCTATGGTTCGTAACTATAGGGAAGTATAA 687 0.4643 MYASTSFTSHLVHELLVDSHSRRLLMLPNPLHQTPNSPSPSTTNTHNSTDLYLGDGAFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSDLVINDSSSSNSSNNSPSPRLANKGIKKKALKTFPTLSYSPELRLPGLDTECVICLSEFSNGDKVRVLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIHTCQKIVGTQPPPAVQPVSETIIRIEPLEPEAMVRNYREV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2510 228 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Dod04g2510 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
Dod04g2510 228 SUPERFAMILY RING/U-box 120 189 - -
Dod04g2510 228 SMART ring_2 142 183 IPR001841 -
Dod04g2510 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 188 IPR013083 -
Dod04g2510 228 CDD RING-H2_PA-TM-RING 141 184 - -
Dod04g2510 228 Pfam Ring finger domain 141 184 IPR001841 -
Dod04g2510 228 PANTHER RING-H2 FINGER PROTEIN ATL78 1 228 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2510 Dod-Chr4 48895759 48896698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2510 35 188 C3H Transcription Factor Family AT3G10910 49.359 2.13e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2510 K19040 - gmx:100527126 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2510 04 48895759 48896698 Dod09g1786 09 39492266 39493127 PCT