Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2500 ATGGATTTGGATGATTTCCGATCCATATTGGACACCGCCGGCGTCGACCTTTGGGTTTTCATCGACGCCGCAATCTCCGTCGCTTCCTCCGATTACGGCGGCGAATTTAAGCGTCGGAGGGACGGAATCGTGCAGCGCGTTTACGCCGCTACTACGACTCCGCCGCCGTGCCGGAATTGCGAACCCAGTGATGGAAAGATTGAGAAACGAAGCAGTACGTCAACGGAAGACGAGGAGGAGGAGCTGGATCCTTACGGAGGGTTGTTCGATGACGAGCACAAGAAGATTCTAGAAATTAAGCAGCAACTTGAAGACCCTCACCAGTCCGAAAATTCCTTGGTGGAGTTGCTACAGAATCTCGCGGACATGGATATTACATTCCATGCACTAGAGGAAACTGACATTGGGAGGCACGTGAACCGGTTGCGGAAGCATTCCTCCAATGAAGTTCGGAGATTGGTGAAGCTTCTTGTCAGAAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGGCACCAGGAGAACCTGCCACTCTCATGGGTGATGAAGACACCCCCCAGCAGAAAACCCCACAGAATGGGCGTCATCAGATTCCTGATTTTGCATACTCTTCAAATCCACACAATGGGAATTTTGGATCAGAGCGCAACAGCTCAGGAGCGGGACCAAAACCAAAAACAGTTCCTCGCAAAGAAGCTCCTCCAAAACCAGCTCCATCACTATCAGTTCCTACTCCTCCTCCTCTTGCTCCTCAAAACAGACAGAGAGATAGCAATTTTGATTCGGAGAGACTTGCTTCAGCAAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACCTCCATGAGTTACCAAAGTCCAAGAATGCCTTCTTTGCAAAGAACAAAGGCGGCATTGGTTCTCAGGGAAGGCACTGGTGA 960 0.4948 MDLDDFRSILDTAGVDLWVFIDAAISVASSDYGGEFKRRRDGIVQRVYAATTTPPPCRNCEPSDGKIEKRSSTSTEDEEEELDPYGGLFDDEHKKILEIKQQLEDPHQSENSLVELLQNLADMDITFHALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATLMGDEDTPQQKTPQNGRHQIPDFAYSSNPHNGNFGSERNSSGAGPKPKTVPRKEAPPKPAPSLSVPTPPPLAPQNRQRDSNFDSERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKSKNAFFAKNKGGIGSQGRHW* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2500 319 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 319 IPR044790 -
Dod04g2500 319 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 90 176 IPR035441 -
Dod04g2500 319 Pfam TFIIS helical bundle-like domain 116 165 IPR017923 -
Dod04g2500 319 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 94 173 IPR035441 -
Dod04g2500 319 MobiDBLite consensus disorder prediction 52 84 - -
Dod04g2500 319 SMART TFS2_5 96 167 IPR003617 GO:0005634
Dod04g2500 319 MobiDBLite consensus disorder prediction 176 267 - -
Dod04g2500 319 Coils Coil 263 290 - -
Dod04g2500 319 ProSiteProfiles TFIIS N-terminal domain profile. 91 168 IPR017923 -
Dod04g2500 319 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 319 - -
Dod04g2500 319 CDD TFIIS_I 94 166 - -
Dod04g2500 319 MobiDBLite consensus disorder prediction 184 222 - -
Dod04g2500 319 MobiDBLite consensus disorder prediction 233 252 - -
Dod04g2500 319 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2500 Dod-Chr4 48830022 48833170 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dod04g2500 Med26 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2500 - - gmx:100796457 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2500 04 48830022 48833170 Dod04g2500 04 48830022 48833170 ECH
Dod04g2500 04 48830022 48833170 Dod09g1775 09 39400167 39403871 ECH
Dod04g2500 04 48830022 48833170 Dod09g1775 09 39400167 39403871 PCT