Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2495 ATGAGCGTGGAAGACCTTCCTCGGAAGGAGGTGCACGTGCTGAAGGGGCACGAGGGAGCTGTATTGGCTGCGAGGTTCAACGGGGACGGCAATTATTGCCTAAGCTGCGGCAAAGACCGCACCATACGCCTCTGGAATCCCCACCGTGGCATCCATATCAAGACCTACAAATCCCACGGCCGCGAAGTCCGTGATGTCCACGTCACCTCCGACAACTCCAAGCTGTGTTCCTGCGGTGGTGATCGACAGATCTTTTACTGGGATGTTGCCAGCGGACGCGTCATTCGGAAATTTCGCGGCCATGACGGTGAGGTAAATGCTGTGAAGTTCAATGAGTATTCCTCTGTTGTGGTCTCAGCTGGTTTCGATCAATCGTTGCGTGCTTGGGACTGCAGATCCCACAGCACTGAGCCTATCCAGATTATTGACACATTTGCAGATAGTGTGATGTCTGTTTGCTTAACAAAAACTGAAATTATCGGAGGAAGTGTTGATGGAACTGTTCGAACATTTGACATTCGTGTGGGCAGAGAAACATCTGATAACCTAGGGCAACCTGTCAACTGTTTATCCATGTCAAATGATGGTAACTGCATTCTAGCCAGTTGCTTAGACTCTACTCTGCGCCTTTTGGACAGGTATGTGTGTAACATTTTGGGGGAATTTAATATGGATCTTTATCCCTGCTACTGCCTTACCAATACGGATGCTCATGTAACTGGTGGCTCTGAGGATGGCTACATCTATTTCTGGGATCTTGTAGATGCTTCTGTTGTGTCAAGATTCCGAGCTCATACCTCAGTGGTAACTAGCGTAAGCTATCACCCAAAGGAAAACTGCATGGTAACTGCTTCTGTGGATGGCACCATTCGAGTATGGAAGGCA 885 0.487 MSVEDLPRKEVHVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLCSCGGDRQIFYWDVASGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGFDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRETSDNLGQPVNCLSMSNDGNCILASCLDSTLRLLDRYVCNILGEFNMDLYPCYCLTNTDAHVTGGSEDGYIYFWDLVDASVVSRFRAHTSVVTSVSYHPKENCMVTASVDGTIRVWKA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 295 IPR001680 GO:0005515
Dod04g2495 295 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Dod04g2495 295 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Dod04g2495 295 Pfam WD domain, G-beta repeat 52 88 IPR001680 GO:0005515
Dod04g2495 295 Pfam WD domain, G-beta repeat 9 46 IPR001680 GO:0005515
Dod04g2495 295 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Dod04g2495 295 Gene3D - 4 295 IPR015943 GO:0005515
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Dod04g2495 295 PANTHER WD40 REPEAT PROTEIN 6 294 - -
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 215 252 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 91 130 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 7 46 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 49 88 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 255 294 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 135 172 IPR001680 GO:0005515
Dod04g2495 295 SMART WD40_4 176 212 IPR001680 GO:0005515
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Dod04g2495 295 CDD WD40 10 294 - -
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
Dod04g2495 295 SUPERFAMILY WD40 repeat-like 6 294 IPR036322 GO:0005515
Dod04g2495 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2495 13 292 Eukaryotic Initiation Factors Gene Family AT2G46290 20.755 4.29e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2495 K13124 - gmx:100795039 542.347