Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2490 ATGGACTTCGACGAGTACGAGTATTTGGAGAAGACAGTGGAGGAGCACGACGACAGGGACTCCTCCAAGCCCAAGAAGAAGGACGACAGGTCTTACCGGAAGCGCGACGTCGACGACGATCTCGACGCCGCCGAAGACAAGCGCAGCAAGCGCTCCAGGCCCGACGACGACGCCAATGGCTCCAAGAAGGACCGCGACGACCGCGACCGCGAACGCGAGCGCTCGAGCCGCGACAGGGAGCGCCACCGGAGTGAGAGGGAGAGGGACGGGGAGAGGAGCAGCAGGGAGAAAGAGAGGGATAGAGAGAGGAGGGATAAGGATAAGGATAGGGATAGGGATAGGGAACGGAGAGATAGGGATAGGGAGAGGGAAAAGGAACGGGAGAGAAGGGAGAGGGAGAAGGAGAAGGAGAAGGAGAGAGAGAGGGAGGAGAGAGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGGGACAGAGAAAGAGAACGAGATTTCGAATCGCGTGATGGCCGGAGATTTAGGGATAAGAAAGAGGCTGCGGAGCCTGAGGCTGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATACGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGACTGATCATGGATAGGAACTCAAGACGCTCTAAAGGAGTCGGGTATATTGAATTTTATGATGTGATGTCAGTGCCGATGGCAATTGCTCTTTCTGGCCAACTTCTTCTCGGGCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCAGTGGGGCTGCTGGTGCAGCAGGACCATATGGTGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACCGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGGTTGTACAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGTTTTGGGTTTGTTCAGTTTGCCCATCTCGAACATGCCAAGGCAGCCCAGAGTTTAAATGGAAAATTAGAGATAGCTGGCAGGACTATCAAGGTTTCGTCTGTGACTGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCAGATTTAGATGATGATGAAGGTGGATTGTCTTTAAATGCACAATCAAGAGCAATGCTTATGCAGAAGTTGGCAGACCGCCATGGTCTTCCTGGAAGCAATAATGGTGTGCCCGCTGTGAATGGGGCTGTTCCTGTTCAGCAGCCTGTTAGCTTGCCTATTGGTAATCCAGGTCTAATACCTGCCACAACTCTCCCAACACAAATTCTGCCTGCTCCAGTGACAGAACCTGTAGGAACTCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCTAGCACTGAGGTCTGTGATTAA 1446 0.5111 MDFDEYEYLEKTVEEHDDRDSSKPKKKDDRSYRKRDVDDDLDAAEDKRSKRSRPDDDANGSKKDRDDRDRERERSSRDRERHRSERERDGERSSREKERDRERRDKDKDRDRDRERRDRDREREKERERREREKEKEKEREREERERSRRSRSRSERDRERERDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGAAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLSLNAQSRAMLMQKLADRHGLPGSNNGVPAVNGAVPVQQPVSLPIGNPGLIPATTLPTQILPAPVTEPVGTPSECLLLKNMFDPSTEVCD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2490 481 SUPERFAMILY RNA-binding domain, RBD 184 276 IPR035979 GO:0003676
Dod04g2490 481 SMART rrm1_1 192 264 IPR000504 GO:0003723
Dod04g2490 481 SMART rrm1_1 294 367 IPR000504 GO:0003723
Dod04g2490 481 TIGRFAM SF-CC1: splicing factor, CC1-like family 84 478 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dod04g2490 481 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 479 - -
Dod04g2490 481 CDD RRM2_RBM23_RBM39 295 367 - -
Dod04g2490 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Dod04g2490 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 365 IPR000504 GO:0003723
Dod04g2490 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 260 IPR000504 GO:0003723
Dod04g2490 481 Gene3D - 287 385 IPR012677 -
Dod04g2490 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Dod04g2490 481 CDD RRM1_RBM39_like 192 264 - -
Dod04g2490 481 SUPERFAMILY RNA-binding domain, RBD 292 370 IPR035979 GO:0003676
Dod04g2490 481 PANTHER CC1-LIKE SPLICING FACTOR 1 479 - -
Dod04g2490 481 Gene3D - 184 278 IPR012677 -
Dod04g2490 481 Coils Coil 116 158 - -
Dod04g2490 481 MobiDBLite consensus disorder prediction 1 192 - -
Dod04g2490 481 MobiDBLite consensus disorder prediction 9 190 - -
Dod04g2490 481 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 386 478 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2490 Dod-Chr4 48746303 48751396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2490 265 366 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.45e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2490 K13091 - gmx:100802446 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2490 04 48746303 48751396 Dod04g2490 04 48746303 48751396 ECH
Dod04g2490 04 48746303 48751396 Dod09g1768 09 39340069 39346939 PCT