Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2488 ATGATGTTTCCTAGTCATCTGAATAAGGAGAGGGAGATGTCTGCTATGGTGGAAGCTTTGACTCATGTTGTATGTGGAGAGGTGCCAGGTGGTAGTGATCATCATGATGAGAATAAGGTTCTGCATCATCAGAATATAGACAATAGCAGTGCTGCAAATGAAGGAGGTGCAGGTGCTAGTGTTGTTGCTGTGACACGAAACATGCCTTCTGGTTCTGCAGCAACACCATCTTCATCATCTTCATCTTATGGTGGCAAGCCTGCTCTCAAGAGAAGTAGGGAAGATGATGCATCCTTTGGTTCATCCCCTGCTGTCCCTGCAACTGCACAGATTGCAAGCACCACGACAGCAGAAACAAGACAAATACCAGTTCCAGTGTACGAATACAGAACAGACAACAAGGATACAGTACCAAGGGGTCATGAAGATCAACCAAGGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCGGCAGAGATCAGAGACCCATTCAAGGCGACGAGAGTGTGGTTAGGAACATTCAACACAGCAGAGGCAGCAGCCAGAGCATACGACCAAGCCTCTCTGCGTTTCAGAGGCAACAAGGCAAAACTCAACTTCCCTGAAAACGTGACGCTCGTGAATCCACCACCGGATAATACCCATTTCACCATTTCGCATTCTTCTTCTTCGTCGTCGTCGTCTTCTTCTTCTGCTGCTGCCAGCTTTGTTTCCAATATTCCTTCTGCCACAGAGTCAATAGTTCACACTCAGGATTACTGCACCTTGCAGGGTTCACATGCTTCAACCAATTTGTATGACTTTCCTTCCCAGTTTTCAGACTTTCCCATTAGCTTATATGATCAGATTATTGTGTCATCTGCCACGGCTGCTGCTGCTTCGTCGCCTTCGGTTTCTTATTCTTCCTCTTCTGTGGCTTCTCCAAAGGCAGCTCCGATTCCTTCGGTTTATTCTACACAGATGCAGGCATGGTCTTCTGGTTATAGCTCCTCTCCTTCTCAATGA 1017 0.472 MMFPSHLNKEREMSAMVEALTHVVCGEVPGGSDHHDENKVLHHQNIDNSSAANEGGAGASVVAVTRNMPSGSAATPSSSSSSYGGKPALKRSREDDASFGSSPAVPATAQIASTTTAETRQIPVPVYEYRTDNKDTVPRGHEDQPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFNTAEAAARAYDQASLRFRGNKAKLNFPENVTLVNPPPDNTHFTISHSSSSSSSSSSSAAASFVSNIPSATESIVHTQDYCTLQGSHASTNLYDFPSQFSDFPISLYDQIIVSSATAAAASSPSVSYSSSSVASPKAAPIPSVYSTQMQAWSSGYSSSPSQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2488 338 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Dod04g2488 338 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Dod04g2488 338 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Dod04g2488 338 PANTHER DNA-BINDING DOMAIN 35 334 IPR044808 GO:0003700|GO:0009873
Dod04g2488 338 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Dod04g2488 338 MobiDBLite consensus disorder prediction 132 151 - -
Dod04g2488 338 PANTHER DNA-BINDING DOMAIN PROTEIN 35 334 - -
Dod04g2488 338 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Dod04g2488 338 MobiDBLite consensus disorder prediction 103 117 - -
Dod04g2488 338 MobiDBLite consensus disorder prediction 68 117 - -
Dod04g2488 338 MobiDBLite consensus disorder prediction 68 86 - -
Dod04g2488 338 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Dod04g2488 338 MobiDBLite consensus disorder prediction 132 150 - -
Dod04g2488 338 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Dod04g2488 338 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2488 Dod-Chr4 48724692 48727235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2488 142 232 AP2-EREBP Transcription Factor Family AT5G13330 67.391 3.45e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod04g2488 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2488 - - adu:107480341 248.054