Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2460 ATGGCGCCAAAGCAGAGAGCCTCGAGGAAGTTGAGCAGAAACCCTGAATTGGTAAGGGGTATTGGCAAGTACTCAAGGTCCAAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTGCCGCGCCACGATCCCAAAGCTAAGCCTGAAGCTCCTCCTCAGAAAGCCCCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTCCTCAACAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCTAGCATTACTACAGGGACGGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGAAAAAGGGTGGTGTTTCTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTTACCGGCCCTTTTAAGATTAATGGAGTGCCTTTGAGACGCGTGAATCAATCTTATGTCATTGGCACATCAACCAAAGTAGATGTCTCTGGTGTTAATGTGGATAAAATTGATGACAATTACTTTGCAAAGGAAGCCGAGAAAAAGAAGAAGAAGGGAGAGGGCGAGTTCTTTGAGGCAGATAAGGAGGAGAAGAACGTCCTGCCCCAGGAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCCTTGATAAAAGCCATTCAGAGTGTTCCAGATTTGAAGGCTTATCTTGGTGCTAGGTTTTCCCTGAAGGCAGGCGTGAAGCCTCATGAGCTAGTCTTCTAG 705 0.4851 MAPKQRASRKLSRNPELVRGIGKYSRSKMYHKRGIWAIKAKNGGVLPRHDPKAKPEAPPQKAPKFYPADDVKKPLLNKHKPKPTKLRASITTGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNVDKIDDNYFAKEAEKKKKKGEGEFFEADKEEKNVLPQEKKDDQKTVDSALIKAIQSVPDLKAYLGARFSLKAGVKPHELVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2460 234 MobiDBLite consensus disorder prediction 41 80 - -
Dod04g2460 234 Gene3D - 88 172 IPR014722 -
Dod04g2460 234 SUPERFAMILY Translation proteins SH3-like domain 88 176 IPR008991 -
Dod04g2460 234 Pfam Ribosomal protein L6, N-terminal domain 4 56 IPR005568 GO:0003735|GO:0005840|GO:0006412
Dod04g2460 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Dod04g2460 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Dod04g2460 234 CDD KOW_RPL6 82 234 IPR041997 -
Dod04g2460 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2460 Dod-Chr4 48432623 48434680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2460 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 78.205 5.56e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2460 K02934 - gmx:100784101 391.734