Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2439 ATGACGGCTTTCTCTGAGTTCTTGTATCAGCTTTACGCCAAGGCAATAGTCTTGTTGGCATATTTTCTAATAGAACTTATCCTTGTTGTTCAGTATCTGAGGTCAGATACACGCCCAATTTCCACCACCCAGTACCTCAAATTCATCGAAGAGAAGAACCCCACAATTTGCTACACAAAAGGAAGGGTAGTGGAGCCAGCAGATCACATAGTAGAATGCAGGGTGTGCTTATCCGAATTCGAGGAAGGGGACAAGCTGAGGGACCTCAAGTGCAAGCACGCATTCCACAAGGATTGCTTGGACAAGTGGTTGCAGGAATCGTGTGCTACCTGCCCACTCTGCAGGAACAAAGTGCTGCCGGATGATGTTGTTGCCAAGTATCACCTCCTTCAAAACCAGGTAGATTATGATGGGGATGATAACCAGCTTATCCTCTTGTTATCTTCAATACGGGGTGGTAGTACTTTCCATAGATATCTCTGA 483 0.4576 MTAFSEFLYQLYAKAIVLLAYFLIELILVVQYLRSDTRPISTTQYLKFIEEKNPTICYTKGRVVEPADHIVECRVCLSEFEEGDKLRDLKCKHAFHKDCLDKWLQESCATCPLCRNKVLPDDVVAKYHLLQNQVDYDGDDNQLILLLSSIRGGSTFHRYL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2439 160 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Dod04g2439 160 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Dod04g2439 160 SUPERFAMILY RING/U-box 52 121 - -
Dod04g2439 160 CDD mRING-H2-C3H2C2D_ZSWM2 72 115 - -
Dod04g2439 160 Pfam Ring finger domain 72 115 IPR001841 -
Dod04g2439 160 SMART ring_2 73 114 IPR001841 -
Dod04g2439 160 SMART ringv_2 72 115 IPR011016 GO:0008270
Dod04g2439 160 PANTHER - 1 154 - -
Dod04g2439 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2439 Dod-Chr4 48195398 48196095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2439 72 126 C3H Transcription Factor Family AT1G15100 50.909 2.74e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2439 K16282 - gmx:102669811 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2439 04 48195398 48196095 Dod04g2439 04 48195398 48196095 ECH
Dod04g2439 04 48195398 48196095 Dod04g0438 04 6076377 6077430 PCT