LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2424	ATGGCTTTGTCAGCCATTGAGGCGTGCAAGGCAGAGGATCCAGTGGTGGGCACTCAGAACAGCTATCAAGAACATCATGAAAGGTCTCAGTGGGTGCTCAATGCTCCTGATCCCCCAACTCCGTGGCATGAGATTGCGGGTTCTGTGAGGAACATCATTTCACACTATCAAGATAAGTGCTCTTCACTCAGAGGCCAAACAGGACCCAAAGTAGTGCTCTCACTCTTGAGGGGCATTTTTCCTGTTCTTGATTGGGGAAGAAATTATACTGCAACCAAATTCAGGAACGATTTGCTTGCTGGCCTAACTATTGCAAGTCTCTGCATTCCGCAGAGCATTGGCTATGCAACTTTAGCAAAGCTTGATCCTGAATATGGCCTATACACGAGTGTTGTGCCGCCTCTTATCTATGCCTTAATGGGAACTTCAAGAGAAGTGGCAATTGGACCCGTGGCCGTGGTGTCGATCCTATTGTCATCAATGATTCAGAAATTAATAGACCCTGATGCTGATCCTGTTGGATACAAAAAGCTTGTTTTCACTGCCACTCTCTTTGCTGGTATATATCAGGCTGCGTTTGGAATCTTCAGGTTGGGGTTCTTAGTCGATTTTTTCTCCCATGCTGCTATTGTTGGATTCATGGCTGGAGCTGCTATAATAATTGGTCTTCAACAGCTGAAGGGACTATTTGGGATCAATAATTTTACCAGCAAAACCGACATAGTCTCTGTCATCAAGTCCGTTTGGGAATCGGTTCATCATCCCTGGAATCCCCGCAATTTTGTCGTGGGATGTTCGTTCTTCATTTTCATCCTATTTACGAGATTTCTGGGTAAAAGGAACCGGAAACTGTTCTGGTTGCCAGCAATATCCCCACTAGTATCGGTAATACTATCAACTCTCATAGTTTTTGTGGCACGAGCTGACAAGAGTGGAGTTAATATTGTCAAACATATAAAAGGAGGACTGAATCCGAGCTCCATCAATCTGATAGAGTTGAATAGCCCCCATCTTGGAGCATTGGCCAAAGTTGGATTAGTTGCAGCTGTTGTTGCACTCACTGAATCAGTTGCTGTTGGTCGATCCTTTGCATCCATTAAAGGGTACCACCTCGATGGAAACAAGGAAATGGTGTCGTTAGGCCTTGTGAACATCATAGGATGCTTCACATCTTGTTACGTTGCAACCGGTTCTTTCTCCCGCACGGTGGTTAATTTCACTGCCGGTTGTGAAACATTAGCGTCAAACATTGTGATGGCCATTACGGTTTTCATATCACTGCAATGCTTGACCAAGCTACTGTATTTTACTCCAACGGCAATTCTTGCTTCAATAATCCTTTCAGCTCTCCCGGGACTCATAGACATCAACGAAGCTTACAGAATATGGAAGGTTGATAAGTTTGATTTTCTTGCTTGCATTGGAGCCTTCTTCGGGGTGCTGTTTGCCTCAGTGGAGATTGGTCTGCTAGTGGCGGTGGGGATATCTTTTACAAAGGTCATATTGATATCTATTGGAGGTAGCACAGAAACTTTGGGAAGACTTCCGGGCACAGATGTGTTCTGTGATGTCCATCAGTATCCTATGGCTGTTAAGATTCCTGGGGTTGCAATACTACGCCTTAAGTCTGCATTGCTTTGCTTTTCTAATGCCAATTCAGTCAGAGAAAGGATCATGAAATGGATCACTCAGGAAGAAGCGCAGGGTAATCAGGAAGACACCAGAAGCAGCATAATTCAGCTAGTAATCCTTGACACCTCCAACTTGGTGAGCATCGACACCTCAGGAATTGCTTCTTTAGAGGAACTGCACAAGAGTTTGGTTTCAAGTGGGAAGCAGGTATTTTTCACTGTAATTTCGGAGTCTTCACATCTACATTCTGCCTATTTACCAACTACAATAAATTCCTGTCAGTTAGCCATTGCCAACCCGAGGTGGCAAGTGATGAACAAGCTAAAGGCGACCAACTTTGTCAAAAGAATTGGAGAAAGGGTCTTCTTGACCGTTGGAGAAGCCATTGACTGCAAAATGGATTGCTAA	2040	0.4441	MALSAIEACKAEDPVVGTQNSYQEHHERSQWVLNAPDPPTPWHEIAGSVRNIISHYQDKCSSLRGQTGPKVVLSLLRGIFPVLDWGRNYTATKFRNDLLAGLTIASLCIPQSIGYATLAKLDPEYGLYTSVVPPLIYALMGTSREVAIGPVAVVSILLSSMIQKLIDPDADPVGYKKLVFTATLFAGIYQAAFGIFRLGFLVDFFSHAAIVGFMAGAAIIIGLQQLKGLFGINNFTSKTDIVSVIKSVWESVHHPWNPRNFVVGCSFFIFILFTRFLGKRNRKLFWLPAISPLVSVILSTLIVFVARADKSGVNIVKHIKGGLNPSSINLIELNSPHLGALAKVGLVAAVVALTESVAVGRSFASIKGYHLDGNKEMVSLGLVNIIGCFTSCYVATGSFSRTVVNFTAGCETLASNIVMAITVFISLQCLTKLLYFTPTAILASIILSALPGLIDINEAYRIWKVDKFDFLACIGAFFGVLFASVEIGLLVAVGISFTKVILISIGGSTETLGRLPGTDVFCDVHQYPMAVKIPGVAILRLKSALLCFSNANSVRERIMKWITQEEAQGNQEDTRSSIIQLVILDTSNLVSIDTSGIASLEELHKSLVSSGKQVFFTVISESSHLHSAYLPTTINSCQLAIANPRWQVMNKLKATNFVKRIGERVFLTVGEAIDCKMDC*	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2424	679	CDD	STAS_SulP_like_sulfate_transporter	527	667	-	-
	Dod04g2424	679	PANTHER	SULFATE TRANSPORTER	636	676	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
	Dod04g2424	679	ProSitePatterns	SLC26A transporters signature.	123	144	IPR018045	GO:0008271\|GO:0008272
	Dod04g2424	679	Pfam	STAS domain	527	622	IPR002645	-
	Dod04g2424	679	PANTHER	LOW AFFINITY SULFATE TRANSPORTER 3-LIKE	18	615	-	-
	Dod04g2424	679	PANTHER	LOW AFFINITY SULFATE TRANSPORTER 3-LIKE	636	676	-	-
	Dod04g2424	679	PANTHER	SULFATE TRANSPORTER	18	615	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
	Dod04g2424	679	ProSiteProfiles	STAS domain profile.	546	676	IPR002645	-
	Dod04g2424	679	Pfam	Sulfate permease family	94	474	IPR011547	GO:0016021
	Dod04g2424	679	Gene3D	STAS domain	508	677	IPR036513	-
	Dod04g2424	679	SUPERFAMILY	SpoIIaa-like	529	621	IPR036513	-
	Dod04g2424	679	TIGRFAM	sulP: sulfate permease	81	617	IPR001902	GO:0015301\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2424	Dod-Chr4	48072306	48079697	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g2424	23	675	Inorganic Solute Cotransporters	AT5G10180	64.165	0.0	880

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2424	K17469		-	gmx:100775538	1067.37