Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2411 ATGGCAGCAGCTATAGACATGTACAATAGCAACTACAACACCCCAGATTTCTTAGATCCCTATAGTGAAGAGCTGATGAAAGCACTTGCACCTTTTATGAAAAGTGATTCTTCAACCTCTTCTCCTTCTTCTTTTTCTTCTTCTTTCTCATCATACCCTTCCCGCATCTCTTACTCTCCACTTTCATCATCACCATCATCATCATCATCATATCCTCTCATCAATTCGTATCCCAATCTCTACTCACCCCCATCCACCACCACCAACACCAACACCTTCTTCTCCAACCACCACCGAAAGGTTCAAACCCAAACATCTTCCATAGGCCTCAACAAACTCACCCCATCTCAAATCCTCCAAATCCAAGCCCAATTCAGCCTTCGCCAACAACAACAACAACAACAACACATGGCTTCCATATCCACACCCTCTCTCCAACACCAAAACCAAAACCCAACCCAACTCCTTCACCACCAAACCCAACAACACGCCCTAAGCTTCCTCTCCCCAAAGCCCGTTCCCATGAAGCATGTTGGCACAGCCGCCAAACCCACGAAGCTGTACCGCGGGGTGAGGCAGCGCCATTGGGGCAAGTGGGTCGCCGAAATCAGGCTCCCCAAGAACCGCACGCGCCTCTGGCTTGGAACCTTCGACACCGCAGAGGAAGCAGCATTGGCATACGACAACGCAGCGTTTAAGCTTCGTGGTGATTTCGCGCGCCTCAATTTCCCTCACCTGAGGCACCACGGCGCGTTCGTGATCGGCGACTTCGGAGACTACAAGCCTCTTCCTTCCTCCGTCGATGCCAAGCTCCAAGCCATTTGCGAGACCTTGGCGAATTCTCAGAAACAGGGGAAAACAGAGGAGCCCTGTTCCTCTTTCGAAGAAGATGTGAAGCCTAACGTCCATGTGGTTGATGACGTTCCCAAGTTGGAGAATGACGTGGCAGAGTCCAAGGGTGAAGTTGTGTGTCCCGAGTTCGAGGATTTCAAGGTGGAGAGTGATGAATATTCTTCCTCAGCCGGTTCGTCTTCCCCTGAATCGGGTGGTACTTTCTTCGATTTCTCGGATTATTGTAAGTGGGACGAGACGGTGGGTTTTGGGTTGGAGAAGTACCCTTCAGTGGAGATCGATTGGGCAGCTATATGA 1149 0.5048 MAAAIDMYNSNYNTPDFLDPYSEELMKALAPFMKSDSSTSSPSSFSSSFSSYPSRISYSPLSSSPSSSSSYPLINSYPNLYSPPSTTTNTNTFFSNHHRKVQTQTSSIGLNKLTPSQILQIQAQFSLRQQQQQQQHMASISTPSLQHQNQNPTQLLHHQTQQHALSFLSPKPVPMKHVGTAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGDFARLNFPHLRHHGAFVIGDFGDYKPLPSSVDAKLQAICETLANSQKQGKTEEPCSSFEEDVKPNVHVVDDVPKLENDVAESKGEVVCPEFEDFKVESDEYSSSAGSSSPESGGTFFDFSDYCKWDETVGFGLEKYPSVEIDWAAI* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2411 382 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 382 - -
Dod04g2411 382 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 382 - -
Dod04g2411 382 SMART rav1_2 187 250 IPR001471 GO:0003700|GO:0006355
Dod04g2411 382 Gene3D AP2/ERF domain 187 245 IPR036955 GO:0003700|GO:0006355
Dod04g2411 382 PRINTS Ethylene responsive element binding protein signature 188 199 IPR001471 GO:0003700|GO:0006355
Dod04g2411 382 PRINTS Ethylene responsive element binding protein signature 210 226 IPR001471 GO:0003700|GO:0006355
Dod04g2411 382 CDD AP2 186 246 IPR001471 GO:0003700|GO:0006355
Dod04g2411 382 Pfam AP2 domain 188 236 IPR001471 GO:0003700|GO:0006355
Dod04g2411 382 ProSiteProfiles AP2/ERF domain profile. 187 244 IPR001471 GO:0003700|GO:0006355
Dod04g2411 382 SUPERFAMILY DNA-binding domain 187 245 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2411 Dod-Chr4 47972448 47974471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2411 1 382 AP2-EREBP Transcription Factor Family AT1G78080 45.685 3.63e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g2411 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2411 K09286 - gmx:100818839 347.436