Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2387 ATGGCTGAGACAAGGCGCTACGTTCCCCCCAATCAATTCAATATTGAGCAAATTCTTTTAGAAGCACAGCATCGATGGCTGCGTCCAGCTGAAATTTGTGAAATTCTCGGTAATTATACGAACTTTCGAATTGCTCCAGAGCCAGCAAATATGCCACCAAGCGGTTCACTTTTCCTGTTTGATCGAAAGGTGCTGAGATACTTTAGAAAGGATGGCCATAACTGGAGAAAGAAAAAGGATGGAAAAACAGTGAGGGAAGCTCATGAGAGACTTAAGGCAGGAAGTGTGGATGTGTTGCACTGCTACTATGCACATGGAGAAGAAGATGAAAATTTTCAAAGACGCACTTACTGGTTGCTTGAAGAGAAACTTTCGCACATTGTTCTTGTCCATTATAGGGATGTGAAGGCAACTAAGGCAAATTTTAGATGTGCTCCCAAAGAAAATGAAGAATCTCTTCCATATGCACAACTAGCTGACAAACTCATGCCCAACACACAGACTGACATTTCTTCATCATCCAGTTTTCATCCACATCGTTACCAGGTTCCTTCACAAACAATAGATACAACAAGCATGAACAGCACTCAAGCACCAGAATTTGAAGAAGCTGAATCAGCATTCAATAACCATGCAAGTTCGGAGTACTACTCTTTCCTCGAGCTTCAATGCCCTGTTGTTGAGATTAAGGCTCAAATACCTGATCCTTATTGTCCTTCGCCATTCATAAATGATCAAGAAAAGTTGTCTGTCATTCCTGGTATGAATATCTCACTCAGTCAAGTCAATAAAATCAAAGACATTGATAATGTTGGATTGACATATGAACCCTCAAAACTCCTTGGCTTTTCAACATGGGAAGATGTCTTACAAAGTAATCCTGGAAGTCAATATGTGCCTTTTCGACCTACATTTTCTGAAATCCAACATGCCGGAATCAATAGAAATCCCTCTCAAGGAGATGAAATAATGGGGCAACATTTTACCACCAACATTGCTAAACAGAATGAGAATGGAAGTCTCATACAAGCTGAAGGAAATTGGCAGGCTTCTGGTTGTAATTCAATACAAATATCCAGTTGGCCCACAGATAGTGCATATTCAGGCTCAACGTGTGAGTTTAGTTATGGTAACTGTAAGCAGGAAGTTAATGAAGTTGATTTTCAAAGATCCTTGGAACAGTGTCTTCTACATCCAGACAAACAAATCAAGGTTCTTATGGGAGGTGACCCTCAAGAAAATATCTTAAATGCAAAGGACACGCTAAAATCAGATCTGGAGACCAATAGAAGCCTGGATAGAATAGATGATACACACTTCACTTTAAAGAAGACTCTGTTAGATGGATCTCCTGCAGAAGAGGGTCTAAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCTAATATACATTCCTCTTCTGGTTCTTATTGGGATACAGTTGAAAGTGAAAATGGGGTTGACAGTGCAACTATTCCTTCCCAAGTGCAGCTGGAAACCTATGCACTGGATCCATCTATTTCCCATGATCAACTTTTTAGCATTGTTGACTTTTCCCCGAGCTGGACATTTGAAGGCGCAGAAATTAAGGTTCTCATTTCGGGACAATTCTTAAGGAGTCAACATGAAGCAGAACAATGCAAATGGTCATGCATGTTTGGCGAAGTAGAAGTGCCAGCAGAGATCATAGGCAATGGTGTTCTTTCTTGTCATACTCCTCCACACAGGTCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGCTAGCATGTAGTGAAATACGAGAATTTGATTTCCGAGTCAGTTACACTCTAGAAGTCAACAATGCAGCTGAGCAGAGAGAGAGCATTTTTTATACTTTCAGTTTGCGATTTGGAGAACTACTGTCCTTGGAGCATGCCTTACCTCAAAATTTTGATCCAAGTAGTGCTAGTGAGAAATCTCAACTGAGAAGTAAGATCAGTTCTTTGCTGAGGGAGGAGGATGACAGTTGGGATAAGCTTCTGAAACTTGATCTAGAGAAAGATTTTTCTCCAGAATATATACAGGAGCAGCTGCTTCAAACTCTTCTGAAAGATAAGTTACTGGCATGGCTCCTTCAGAAAATAACTGAAGATGGGAAAGGCCCTAATGTATTAGATGAAGGTGGCCAAGGTGTGCTTCATTTTGCTGCTGCTCTGGGCTATGATTGGGCACTACAACCCACAGTAGTTGCAGGTGTAAATGTGAACTTTCGTGATGTCAATGGGTGGAATGCTCTTCATTGGGCTGCATTTTGTGGCAGGGAGCACACTGTTGCTTCTCTCATCTCTCTGGGTGCATCACCTGGAGCACTGACTGATCCAAGCCCAGAACATCCTTATGGTAGAACACCGGCTGACCTGGCTTCTACAAATGGTCACAAAGGAATTGCAGGGTATCTTGCAGAATCTTCAATAAGTGCACATCTCATATCTCTTGATTTGAACAGGGATGTGGGAGAAAAGTCTGGAGCCAAAGTAGTACGAGTCCCACAAAATATTGCTGAAGTTAATGACATGTACCAATCATATGACCTGTCATTGAAAGATTCCTTAGCTGCAGTGTGTAATGCCAGCCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTGCAGTCATTCCAAAGAAAACAGCTGAATGAATATGGTGATGATAAATTTGGAATCTCTGATGAAAATGCTCTGTCCCTTATAACAGTAAAATCACACAAGGATGGACAACGCAACGAGCCTGCACATGCTGCTGCAATACGAATTCAGAACAAATTCCGCGGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGGCAAAGAATAGTAAAAATTCAGGCTCATGTAAGAGGTCACCAGGTGAGGAAAAACTGTGGGAAGATAATTTGGTCTGTTGGAATTCTGGCGAAGGTTATTTTGCGTTGGAGACGAAAAGGTAGTGGTTTGCGTGGATTTAAATCGGAAGCTGCTTCTGAGGGAACAATGGTACAAGATATACCATTCAAGGAGGATGAATATGATTTCTTAAAGGAAGGCAGGAAGCAAACAGAGCAAAGGTTGCAGAAAGCCCTAGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTAAAGCATCATACGAGTTCAGAAAGTCCAACAGACACAAAAGAATTTGATAACCTCATTGATCTTGAAGCTTTGTTGGACGAAGATGCTTTCATGCCTACAGCCATCTAG 3312 0.4146 MAETRRYVPPNQFNIEQILLEAQHRWLRPAEICEILGNYTNFRIAPEPANMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDENFQRRTYWLLEEKLSHIVLVHYRDVKATKANFRCAPKENEESLPYAQLADKLMPNTQTDISSSSSFHPHRYQVPSQTIDTTSMNSTQAPEFEEAESAFNNHASSEYYSFLELQCPVVEIKAQIPDPYCPSPFINDQEKLSVIPGMNISLSQVNKIKDIDNVGLTYEPSKLLGFSTWEDVLQSNPGSQYVPFRPTFSEIQHAGINRNPSQGDEIMGQHFTTNIAKQNENGSLIQAEGNWQASGCNSIQISSWPTDSAYSGSTCEFSYGNCKQEVNEVDFQRSLEQCLLHPDKQIKVLMGGDPQENILNAKDTLKSDLETNRSLDRIDDTHFTLKKTLLDGSPAEEGLKKLDSFNQWMSKELGDVEESNIHSSSGSYWDTVESENGVDSATIPSQVQLETYALDPSISHDQLFSIVDFSPSWTFEGAEIKVLISGQFLRSQHEAEQCKWSCMFGEVEVPAEIIGNGVLSCHTPPHRSGRVPFYVTCSNRLACSEIREFDFRVSYTLEVNNAAEQRESIFYTFSLRFGELLSLEHALPQNFDPSSASEKSQLRSKISSLLREEDDSWDKLLKLDLEKDFSPEYIQEQLLQTLLKDKLLAWLLQKITEDGKGPNVLDEGGQGVLHFAAALGYDWALQPTVVAGVNVNFRDVNGWNALHWAAFCGREHTVASLISLGASPGALTDPSPEHPYGRTPADLASTNGHKGIAGYLAESSISAHLISLDLNRDVGEKSGAKVVRVPQNIAEVNDMYQSYDLSLKDSLAAVCNASQAAARIHQVFRVQSFQRKQLNEYGDDKFGISDENALSLITVKSHKDGQRNEPAHAAAIRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILAKVILRWRRKGSGLRGFKSEAASEGTMVQDIPFKEDEYDFLKEGRKQTEQRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHHTSSESPTDTKEFDNLIDLEALLDEDAFMPTAI* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2387 1103 SMART CG_1_2 18 136 IPR005559 GO:0003677
Dod04g2387 1103 Gene3D - 687 842 IPR036770 -
Dod04g2387 1103 ProSiteProfiles IQ motif profile. 951 975 IPR000048 GO:0005515
Dod04g2387 1103 SMART ANK_2a 797 826 IPR002110 GO:0005515
Dod04g2387 1103 SMART ANK_2a 758 787 IPR002110 GO:0005515
Dod04g2387 1103 Gene3D Immunoglobulins 516 612 IPR013783 -
Dod04g2387 1103 Pfam IPT/TIG domain 523 599 IPR002909 -
Dod04g2387 1103 Pfam IQ calmodulin-binding motif 929 948 IPR000048 GO:0005515
Dod04g2387 1103 Pfam IQ calmodulin-binding motif 953 970 IPR000048 GO:0005515
Dod04g2387 1103 Coils Coil 1019 1039 - -
Dod04g2387 1103 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Dod04g2387 1103 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Dod04g2387 1103 PANTHER ETHYLENE-UPREGULATED PROTEIN ER1, PUTATIVE, EXPRESSED-RELATED 454 1100 - -
Dod04g2387 1103 PANTHER ETHYLENE-UPREGULATED PROTEIN ER1, PUTATIVE, EXPRESSED-RELATED 8 223 - -
Dod04g2387 1103 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 454 1100 - -
Dod04g2387 1103 SUPERFAMILY Ankyrin repeat 712 820 IPR036770 -
Dod04g2387 1103 Pfam Ankyrin repeats (3 copies) 730 823 IPR002110 GO:0005515
Dod04g2387 1103 SUPERFAMILY E set domains 523 608 IPR014756 -
Dod04g2387 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 976 IPR027417 -
Dod04g2387 1103 Gene3D - 927 974 - -
Dod04g2387 1103 ProSiteProfiles IQ motif profile. 928 957 IPR000048 GO:0005515
Dod04g2387 1103 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 223 - -
Dod04g2387 1103 SMART iq_5 950 972 IPR000048 GO:0005515
Dod04g2387 1103 SMART iq_5 927 949 IPR000048 GO:0005515
Dod04g2387 1103 ProSiteProfiles Ankyrin repeat profile. 758 790 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2387 Dod-Chr4 47728755 47735987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2387 1 1085 CAMTA Transcription Factor Family AT5G64220 45.512 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Dod04g2387 Ank_2 5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2387 K21596 - gmx:100798875 1662.51