Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2363 ATGAACACAAAAAGGCATAAAAAGAAAGAAGCCACTAGGAGGGAAAGTGAGAGGCTGTCCCATGAAAGCAGCCAAAACACATGCCCAGAATTCCCCCGTGCTCCTCCACCATTCATCCAATCAGGCCACACTTCATGGTGGAAAATTAAAACAGCAACAACCATCTTAACGTTTTCCTTTTCCCATGTTCCCTCTATCTACGTGGAATTCTCTTCCACAATCTCAAAATTCTCTTTTCCCCTAGCACTTTCCTCTGCTTCTTTTCAATTCCTCTTAATGGGTTTTCATTGCAGAAAACTGCTGCAGCAGCATGGGCACATAATTCCTCCTCGCGGAGCAAGTTATCATAGCCCAGCACCATCTCCTTCACCTCAACAACGGCCACTCTCACTTCTGCCCACGATTCCTTGGTTCCACCCTCCCCCTGGTTATGCTGATGATGGCCTTCTCAATCACAATCACATACGTTTACTTCAAGTTGCTATGATTGTCTTCGGTTGCACGTTTGGATTTATCATGATTCTTTGCACCATGTCCATAATCCGAAGGCGCTATTATTCCAGGAGACACAACCATAGGAGAGGAGGAAACACTACCATATTGTTCTATGTCAATGGAGATTCTCCTGATGGTGATGGCGATGGTGATGATGATGATGATGGACCTATTATTGAGCACCCCATATGGTTCATCCGCACGGAGGGTCTCCAGCAATCAGTCATAGAATCCATCACAGTCTTCACATACAGAAGAGATGAAGGGCTAATTGATGGGACTGAGTGTTCTGTTTGCCTAGGTGAGTTTCAAGAGGATGAGACCCTGAGGCTCTTGCCAAAGTGCAGCCACGCTTTTCACATCCCTTGTATTGATACATGGCTTAGATCGCATAAAAATTGCCCCTTGTGCCGTGCACCTGTGGTTCATGATGCTAGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGTTAGTGCTGAGGATAGAGCCACTGATCCTGATTTAAACCTTTCTGGTGAGAATCAAGAGATGATAAATACACAGATGGAGAACTTTGATGGTGGGATAAGTAGAAACCATAACTTAGCAGAAAGTGAGAGTAGTGTTGTGAGGATTATTGGAGATGATGATGATGGTGGAGAGAGTGGAGAAACCCCAGAAAATGTGTTTCCTGTTTATGAGAAGGTGAATTGTCATTCTTCAATTGTAATTTGTTCACATGAAGTGGAAGAGGAGATGCAACCCATGAGGAGTTCTATTTCCATGGATTCTTGTACTGGTTCAATGATGTTTCATGATGTGGTGGATTTGAATTCTGATCAAGAGAGCTTGGACACCCAATTTGGTGACAAAATTAATTCAAGCGGCAAGGATATCATGAAAGTCGATAAGCAGGGTGGTGGAAGTTCAACCACCATTTGCAAACTGGCTTCAATTGGGCGTGTATTGCAGAAGAGGCCAATATCCTTCAGAAGCTCTTTTTCTTCATACAACAGGAAATCCTTATCTTCAAGACACTGTAGGAGCCAGAGTTCAACTCTTCCCTTGTAA 1542 0.441 MNTKRHKKKEATRRESERLSHESSQNTCPEFPRAPPPFIQSGHTSWWKIKTATTILTFSFSHVPSIYVEFSSTISKFSFPLALSSASFQFLLMGFHCRKLLQQHGHIIPPRGASYHSPAPSPSPQQRPLSLLPTIPWFHPPPGYADDGLLNHNHIRLLQVAMIVFGCTFGFIMILCTMSIIRRRYYSRRHNHRRGGNTTILFYVNGDSPDGDGDGDDDDDGPIIEHPIWFIRTEGLQQSVIESITVFTYRRDEGLIDGTECSVCLGEFQEDETLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVVHDASGGGGGGGSGVSAEDRATDPDLNLSGENQEMINTQMENFDGGISRNHNLAESESSVVRIIGDDDDGGESGETPENVFPVYEKVNCHSSIVICSHEVEEEMQPMRSSISMDSCTGSMMFHDVVDLNSDQESLDTQFGDKINSSGKDIMKVDKQGGGSSTTICKLASIGRVLQKRPISFRSSFSSYNRKSLSSRHCRSQSSTLPL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2363 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 311 IPR013083 -
Dod04g2363 513 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 145 502 IPR044675 -
Dod04g2363 513 SUPERFAMILY RING/U-box 251 309 - -
Dod04g2363 513 SMART FANCL_C_2 257 310 - -
Dod04g2363 513 MobiDBLite consensus disorder prediction 310 335 - -
Dod04g2363 513 PANTHER RING-H2 FINGER PROTEIN ATL54 145 502 - -
Dod04g2363 513 MobiDBLite consensus disorder prediction 1 34 - -
Dod04g2363 513 ProSiteProfiles Zinc finger RING-type profile. 261 303 IPR001841 -
Dod04g2363 513 CDD RING-H2_PA-TM-RING 260 303 - -
Dod04g2363 513 Pfam Ring finger domain 260 303 IPR001841 -
Dod04g2363 513 SMART ring_2 261 302 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2363 Dod-Chr4 47428665 47430840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2363 161 307 C3H Transcription Factor Family AT1G72220 47.297 4.19e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2363 - - lja:Lj4g3v2731650.1 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2363 04 47428665 47430840 Dod04g0503 04 7233857 7235305 PCT