Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2334 ATGGCGACGTTTTTCGATCCTGTTGGGGTTCTGTGCCCACAGTTTTGGCCTCCCTCTACGGCGGCGGCGGCGGCCCTGCTGTCCACGTCACCGACTAGGTCGCTGCTGCTGAGTTTGGTGCCTTTTGAGACTGCGGTTGGCGAGTCCGCGTTGATAAGGGAGCTTGAAGCTTTCGGGGACGTAAGAGGGGCTCAGCTGGAAGGGTTGTATGAGGGAACGGGAATGGCCACCGTTCACTTCTACGACCTAAGACACGCGGAGGCGGCGTTCACGGCCATTCGGTGGCACCACATGCATTACAATACAAGGCTTCGCAACCAGCACTATTATCATGCTTTGGTGCCACCTCCTCCTCCGACGGCGCGTGTGGTGGCTGCTGGTAGTGTTGTATGGGCCCAATACATCGTCCCTGGATGTGATGATGTAGATGACGGGCAGAACCAAGGGACCATCGTGGTTTTCAATCTGGATTCCAAGGTGGACGCTGATAGTCTCAGAGAAATCTTCGAGGCGTTTGGTCCCGTGAAGGAATTGAGGCATACCCCATTTAAAAAGAACCAAAGATTCGTGGAGTACTTTGACGTAAGAGACGCAGCAAAGGCTTTGAAGCAGATGAATGGCAAGGAAATTCATGGGAAACCTGTGTTTATTGAATTCAGTCGACCAGGAAGAGGTCACTGCCGGAACTTCAAACCACCTCCATCGGAACTGCCGAACAAACTCTGGCCTCGTTTTGCTCCTGATGATGATGATGATGCTACTTCTCCCTCGCTTTGTTCTCACATGAAATCAGCTGTTACCAAGGGAAGTAATTATGGTAAGACCACCGCAAATCCTGCCGCGGGTTCTACTAAAGCAGCAGCAATGGCAGCGGCTTCGGGGAATTTGGGAGAGGAATTCGTTGGGAATAATGGGAATGGGGTTGAAGAAAGACATTGCCAAGGGCCTGCAAAGAGAAATTCCGTTGAAAAACATTGCGGCGAGTCCATGGTAGGAGGCACCAAGCACCAACAACAACAACCGGGGAGAAGCAGGCACCGGAAGGGAAAGCAGGAAAAGAAACATGAAACTAGGTTTCTAATAAAGGAAGACGCTTCCATGAAGTCTAATGGTTGCATAGATTCTAGAACTACTGTGATGATTAAGAACATACCCAACAAGTACAGCCAGAAGCTACTATTGAACATGTTGGACACCCACTGTAATCACTGCAACGAGCAGATTGGCGTGGGCAATGACCAGCCTCTGTCCTCCTATGACTTCGTGTACCTTCCCATTGATTTCAACAACAATTGCAATGTGGGATATGGGTTTGTGAACATGACGTCTCCGGAGGCAACCCTGAGGCTCTATAAGGCCTTCCATCATCAACCCTGGGAAGTCTTCAATTCAAGAAAAATCTGCGAGGTCACCTACGCTAGAGTCCAGGGTTTGGAAGCACTGAAAGAGCACTTCAAGAACTCGAAGTTCCCGTACGAGACGGAGCATTACCTGCCAGTGATGTTTTCACCTCCTCGAGATGGGAGGCAACTGACAGAGCCACTTGCAGTAGTTGGTGATCACAAGCATAATAAGCACCAATTAACTACTAGTATGAATATGATCACCACCATCCCCATTGGTGTTGGGCCTTCTGATTACTTGCTTTGCAGCGGCAGCAGCGGAAGTTGCCAAAACGGCAGCGTTGAAGGTGATGATGACTCAACAACAACAACCGGAAGAACCTGCAGCAGTGAATTAAGTGGATCGAGTGAGTGA 1758 0.5 MATFFDPVGVLCPQFWPPSTAAAAALLSTSPTRSLLLSLVPFETAVGESALIRELEAFGDVRGAQLEGLYEGTGMATVHFYDLRHAEAAFTAIRWHHMHYNTRLRNQHYYHALVPPPPPTARVVAAGSVVWAQYIVPGCDDVDDGQNQGTIVVFNLDSKVDADSLREIFEAFGPVKELRHTPFKKNQRFVEYFDVRDAAKALKQMNGKEIHGKPVFIEFSRPGRGHCRNFKPPPSELPNKLWPRFAPDDDDDATSPSLCSHMKSAVTKGSNYGKTTANPAAGSTKAAAMAAASGNLGEEFVGNNGNGVEERHCQGPAKRNSVEKHCGESMVGGTKHQQQQPGRSRHRKGKQEKKHETRFLIKEDASMKSNGCIDSRTTVMIKNIPNKYSQKLLLNMLDTHCNHCNEQIGVGNDQPLSSYDFVYLPIDFNNNCNVGYGFVNMTSPEATLRLYKAFHHQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPYETEHYLPVMFSPPRDGRQLTEPLAVVGDHKHNKHQLTTSMNMITTIPIGVGPSDYLLCSGSSGSCQNGSVEGDDDSTTTTGRTCSSELSGSSE* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2334 585 SMART rrm1_1 150 218 IPR000504 GO:0003723
Dod04g2334 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 222 IPR000504 GO:0003723
Dod04g2334 585 PANTHER TERMINAL EAR1-LIKE 1 18 528 - -
Dod04g2334 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 214 IPR000504 GO:0003723
Dod04g2334 585 Gene3D - 141 228 IPR012677 -
Dod04g2334 585 PANTHER RNA BINDING PROTEIN 18 528 - -
Dod04g2334 585 Gene3D - 328 481 IPR012677 -
Dod04g2334 585 Pfam RNA recognition motif 2 376 486 IPR007201 -
Dod04g2334 585 MobiDBLite consensus disorder prediction 325 355 - -
Dod04g2334 585 CDD RRM3_EAR1_like 376 477 IPR034458 -
Dod04g2334 585 MobiDBLite consensus disorder prediction 558 585 - -
Dod04g2334 585 SUPERFAMILY RNA-binding domain, RBD 149 457 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2334 Dod-Chr4 47234038 47236563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2334 151 235 Eukaryotic Initiation Factors Gene Family AT1G34140 32.979 1.12e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2334 - - adu:107469016 548.125