Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2317 ATGCAGAGCCAACTTGTATGTAATGGGTGTCGGAACGTTTTGCTTTATCCTAGAGGGGCAACCAATGTTTGTTGTGCGCTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGCACCAGTATCGAATCAAGTTGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCCTCTGTCAAATGTGCACTTTGCCAATATGTCACTAATGTCACTATGAGCAATGGAAGGCTTCCAATTCCCGTCCATAGACCTAATGGAACAGCCAACTCTGGGACAGTACCTTCTACTTCAACAGGTATGCTCTTAAGTAGTTATTTTAGTTTTTTGAGCCAAACTGTTGTGGTCGAAAATCCTATGTCTGTTGATTCAAGTGGAAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA 546 0.4322 MQSQLVCNGCRNVLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVHCGNCRTTLMYPYGAPSVKCALCQYVTNVTMSNGRLPIPVHRPNGTANSGTVPSTSTGMLLSSYFSFLSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2317 181 PANTHER PROTEIN LSD1 1 181 - -
Dod04g2317 181 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 111 IPR005735 -
Dod04g2317 181 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Dod04g2317 181 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Dod04g2317 181 Pfam LSD1 zinc finger 46 70 IPR005735 -
Dod04g2317 181 Pfam LSD1 zinc finger 84 108 IPR005735 -
Dod04g2317 181 Pfam LSD1 zinc finger 7 31 IPR005735 -
Dod04g2317 181 Coils Coil 180 181 - -
Dod04g2317 181 PANTHER PROTEIN LSD1 1 181 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2317 Dod-Chr4 47094129 47096143 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dod04g2317 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2317 - - mtr:MTR_8g089310 329.717