Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2315 ATGGAGCAGGATAATCCTCCTTGGCACAAGCCAAAAATGGACAATGCAGTTGAAAGTCCGGGCAGTCCGCGACATAGAAACGTATCAGCTAGGTGGAATCCAGCTGATGCATGTAGACCAATGATAGATGAAGCTCCTGTGTTTCATCCTACCGTTGAGGAGTTTGAGGATGCCCTTGGGTACATTGCCAATATAAGACCCCAAGCTGAACCTTACGGGATATGCAGGATTGTCCCTCCAGCATGTTGGGTTCCCCCTTGTCCACTGAAAGAGAAAGACATATGGGAAAATGCTAAATTTCCCACCCGGATTCAACAGATTGACTTGCTGCAAAATAGAGAACCCCTGAAAAAGAAAATCAAAGGCAAGAAAAGAAAGCGCAGAAAGCAGTCGAAAATGGGCTCATGTAGACGAAACAGCAAGTCAGTATCTGAAGCTCATGTTACTTCTGAAGAAGACAATTTTGGGTTCCATTCAGGCTCAGATTTCACACTCAAGGACTTTGAACGTTATGCTGGTTTTTTCAAGCATTGCTACTTTGGGCTGAATGATCCCAATGAGGATCAAAAGGTTGGTGATGATAATCAAGAGAAGAAGTGGGAACCCTCTGTGGAGGAAATAGAAGGGGAATACTGGCGAATAGTTGAGCAACCAACGGATGAGGTTGAGGTCTACTATGGAGCCGACTTGGAAACCGGTGCGCTTGGAAGTGGTTTTCCAAAGGCACCATCCTCTACTAATAGCTATTCAAATAAGTATGCGCTATCTGGGTGGAATCTGAATAACTTCCCTCGACTGCCAGGGTCTGTACTGTGCTTTGAAGGAAGTGATATTTCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCGACATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGAGCCAAAAGTATGGTACGGTGTACCCGGAAGCCATGCTACCGCTTTGGAAGTTGCAATGAGAAAGCACTTGCCTAATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCTGAAGGAGTGCCTGTATATCGCACTGTCCAGCATTCTGGGGAATTTGTTATTACTTTTCCAAGGGCATATCACTCTGGCTTCAACTGCGGCTTCAACTGTGCAGAGGCTGTCAATGTGGCTCCTGTTGATTGGTTTGTGCATGGCCAGAGCGCTGCTGAGCTTTACAGTTTGCAGTGTCGTAAGACATCATTGTCACATGACAAGTTGTTATTCAGATCAGCTCGGGAAGCAGTAAGAGCCCTCGCTGAGCTAACTCTTCATGGAAGAGAAAATAAAAGAAGTTTAAAATGGAAGAGTGTCTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAGAAATGGAAAAGGAGAGGCTTGAGTGTCTTCTGAATCATTTAAGGATGTTGAAGATGGATAATGACTTTGATTTGTATAAGGAAAAGGAGTGCTTTTCTTGCTTCTATGACTTGCATTTATCTGCTGTAGGGTGTAAGTGCTCTCCTGACAAGTTTTCTTGTCTTAAACATTCAAATTGGCTTTGCTCATGTAGAATGGATGAAAGATTTGTTCTGTTTCGTTATACTATGGACCAGCTAAGTACATTGGTTAAAGCATTAGAAGGAGATTCGCATGCTATTGAAGTGTGGGAAAATAGAAGCTCTCGAATGGTTTCTGCCAATGCTGAGGATGCTTACATGTGTAAACCAAATGTGGAGATAGACATGTGCAAAACCAAGAGTTATGAAGAAGGTAAAAGCTCAACATGTCGTGCAGGAACCAGTGAGAAGTCAAATTCAGATGTACTTAGCTGTCCTAACAGTCATGTTTCTTCGGAGTTAGTCCACTCAGAGTCTCTCCGTGAAACTTTTTGTGCAGCGTATGGCACTGTTGATTGTCTTAATGACAAAATGAATAACAAAAAGTTTATTATAGATAATGAAGTTATGGTGGAGCAAACAGGATCTATGGATTTGAATATTGATGTTACGTCTAGCGAACATGAAATTAATTTGCTGCATATTGCTGATAACCATGATAATAAGGGTGCTTCACATGTGGAGAAAGTCTGCTATTCAGAGGCCAGCAAGGAACGAGACAATATGGAGCATGGTGCAGGCGGTACCCCATCTGGCTTGGTTGCTGTTTTGGAGAAAGGTTTTTCTGCATATTCAAGGGATCTTCAAAATTCTTGTTCACTTGATGGTTGTAAAGTGTTTGGGGTGGATCTGCAAACACATCCAGATTCAAGAGAGCAGCTCAACAGGGTATTTAAAATGGGAGTTGCAGACACCTCTAATACAAGTTTGTCCTTGACAAACCAAAGGTTCCTAATCCCAGAGTTTGGTACTTCTGTTGAGCCTGTTTGTTTGGGCTCAGTTTTGCATGGAAAGAGGTGGTGCAGTAAGCATGGGATATATCCGAGAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATTCTTGATCCAGCAAGGATCTGTTACTACGTTTCTGAAGTCTCTGATGCTGGATTTCTGGGGCCTCTTTTTAAGGTTACGATGGAAGAACATCCAAGTGAAGCTTTCACGAACACATCAGTGGATAAGTGCTGGGAAACAGTGCTTGATAGACTAAACCATGAAATCAAGAGGCGAAGGAACCTAGGTGAACAAGAACTTCCTCCCTTGGAGCTTCTGCAAAGCATTAATGGGCATAAGATGTTTGGATTCCTTACACCATCCATTATTCAGGGCATTGAAGCTCAAGATCCTAGCCATCAATGTGTAGAGTACTGGAGTCATCAAGAAATTGTTTCTGAATCTTCAGGCTGTGCCAATGATGATTCGAAGTTCACAAATGGTTCTAGTAACTCTCTAGGTGACATCAAGACCAAACTTTTTGGTTTCGATTTGATAAAGCAGGAGCAAGATAACATAGGAGGAGGTTTTCAATCGTTTGAAGAGATGAAGTCATTGCTACAAGGATTCTTGAAAAAGGCAAGTCCTGCTGAGTTAAGTGCAATGCATGAGTTATTCAATTCTGATGCACAGGTTACTCAGTGGAGACCGGGATTCTTAGAACTGATTGAGGAGATCCAGAAAGTTTGTAGATAA 3165 0.4227 MEQDNPPWHKPKMDNAVESPGSPRHRNVSARWNPADACRPMIDEAPVFHPTVEEFEDALGYIANIRPQAEPYGICRIVPPACWVPPCPLKEKDIWENAKFPTRIQQIDLLQNREPLKKKIKGKKRKRRKQSKMGSCRRNSKSVSEAHVTSEEDNFGFHSGSDFTLKDFERYAGFFKHCYFGLNDPNEDQKVGDDNQEKKWEPSVEEIEGEYWRIVEQPTDEVEVYYGADLETGALGSGFPKAPSSTNSYSNKYALSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGEPKVWYGVPGSHATALEVAMRKHLPNLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWFVHGQSAAELYSLQCRKTSLSHDKLLFRSAREAVRALAELTLHGRENKRSLKWKSVCGKDGVLTKAVKTRIEMEKERLECLLNHLRMLKMDNDFDLYKEKECFSCFYDLHLSAVGCKCSPDKFSCLKHSNWLCSCRMDERFVLFRYTMDQLSTLVKALEGDSHAIEVWENRSSRMVSANAEDAYMCKPNVEIDMCKTKSYEEGKSSTCRAGTSEKSNSDVLSCPNSHVSSELVHSESLRETFCAAYGTVDCLNDKMNNKKFIIDNEVMVEQTGSMDLNIDVTSSEHEINLLHIADNHDNKGASHVEKVCYSEASKERDNMEHGAGGTPSGLVAVLEKGFSAYSRDLQNSCSLDGCKVFGVDLQTHPDSREQLNRVFKMGVADTSNTSLSLTNQRFLIPEFGTSVEPVCLGSVLHGKRWCSKHGIYPRGFKSRVKFFSILDPARICYYVSEVSDAGFLGPLFKVTMEEHPSEAFTNTSVDKCWETVLDRLNHEIKRRRNLGEQELPPLELLQSINGHKMFGFLTPSIIQGIEAQDPSHQCVEYWSHQEIVSESSGCANDDSKFTNGSSNSLGDIKTKLFGFDLIKQEQDNIGGGFQSFEEMKSLLQGFLKKASPAELSAMHELFNSDAQVTQWRPGFLELIEEIQKVCR* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2315 1054 MobiDBLite consensus disorder prediction 1 30 - -
Dod04g2315 1054 Pfam F/Y-rich N-terminus 813 857 IPR003888 GO:0005634
Dod04g2315 1054 SMART fyrn_3 816 860 IPR003888 GO:0005634
Dod04g2315 1054 SUPERFAMILY Clavaminate synthase-like 224 439 - -
Dod04g2315 1054 Pfam F/Y rich C-terminus 864 948 IPR003889 GO:0005634
Dod04g2315 1054 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 1052 - -
Dod04g2315 1054 SMART cupin_9 252 418 IPR003347 -
Dod04g2315 1054 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 3 1052 - -
Dod04g2315 1054 Pfam JmjC domain, hydroxylase 285 401 IPR003347 -
Dod04g2315 1054 ProSiteProfiles JmjC domain profile. 252 418 IPR003347 -
Dod04g2315 1054 SMART fyrc_3 866 958 IPR003889 GO:0005634
Dod04g2315 1054 ProSiteProfiles JmjN domain profile. 45 86 IPR003349 -
Dod04g2315 1054 MobiDBLite consensus disorder prediction 115 151 - -
Dod04g2315 1054 Gene3D - 808 946 - -
Dod04g2315 1054 ProSiteProfiles FYR domain FYRC motif profile. 862 953 IPR003889 GO:0005634
Dod04g2315 1054 MobiDBLite consensus disorder prediction 117 135 - -
Dod04g2315 1054 ProSiteProfiles FYR domain FYRN motif profile. 802 860 IPR003888 GO:0005634
Dod04g2315 1054 Pfam jmjN domain 46 79 IPR003349 -
Dod04g2315 1054 Gene3D Cupin 30 402 - -
Dod04g2315 1054 SMART JmjN_1 44 85 IPR003349 -
Dod04g2315 1054 Pfam C5HC2 zinc finger 508 559 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2315 Dod-Chr4 47072030 47078668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2315 806 989 JUMONJI Transcription Factor Family AT1G30810 50.000 3.53e-48 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod04g2315 JmjC 3.9e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2315 - - gmx:100784581 1611.66