Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2304 ATGGGGGCACCATCATCAGCTACTCCACTTTGGCGCAATGGGCCAAAAGGCAAGCCAGTGTTGTGCAACGCATGTGGATCAAGATACAGGCTATGCGGAAGCCTTGATGCCTATTTGCCCAAGCATTTCCACACAGGGCTCCTCAAGAACCTTGAGAATTTGAATGATAATGGCAATCTCAATGTTAGGGACACACCTTCCACCCCCAGGGTTCCAAATGCAGGAAGCACAATTCCAAGTTTTTGGGACACTAAGATCCCTTCAAGGAAACGTTCACGGGTGATATATCGGAGGATTACCCCAATTGAGAAGTTCAAGAATCAGCTTTACAATCTGTGGAAGCTTCATGGGAATCCAGGTGAACTAGAAAAGGTTTTGTTGGACCATAACGTGACCAACAACTTCATACCTAGCGATGAGATCGGCCTTGGAGCCATGCTGCTCAAAGCAGATAAAGATGACACTCCTTCACATAACTGA 480 0.4667 MGAPSSATPLWRNGPKGKPVLCNACGSRYRLCGSLDAYLPKHFHTGLLKNLENLNDNGNLNVRDTPSTPRVPNAGSTIPSFWDTKIPSRKRSRVIYRRITPIEKFKNQLYNLWKLHGNPGELEKVLLDHNVTNNFIPSDEIGLGAMLLKADKDDTPSHN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2304 159 PANTHER GATA ZINC FINGER PROTEIN 7 152 - -
Dod04g2304 159 CDD ZnF_GATA 8 31 IPR000679 GO:0006355|GO:0043565
Dod04g2304 159 SMART GATA_3 1 44 IPR000679 GO:0006355|GO:0043565
Dod04g2304 159 ProSiteProfiles GATA-type zinc finger domain profile. 1 33 IPR000679 GO:0006355|GO:0043565
Dod04g2304 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 35 - -
Dod04g2304 159 Gene3D - 4 94 IPR013088 GO:0006355|GO:0008270
Dod04g2304 159 PANTHER OSJNBB0038F03.10 PROTEIN 7 152 IPR044589 -
Dod04g2304 159 Pfam GATA zinc finger 6 33 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2304 Dod-Chr4 46900251 46900980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2304 8 42 C2C2-Gata Transcription Factor Family AT4G17570 71.429 1.36e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod04g2304 GATA 1.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2304 - - ccaj:109803880 119.783