Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2302 ATGGTGGCACCGTCATCAGCTACTCCACTTTGGCGCAATGGGCCAGAAAACAAGCCAGTGTTGTGCAACGCATGTGGATCAAGATACAGGCTATGTGGAAGCCTTGATGCCTATTTGCCCAAGCATTTCCACACAGGGCTCCTCAAGAACCTTGAAAATTTGAAGGATAATGGCAATCTCAATGTTAAGGACAAGCCTTCAATCAGCAGTGTTCCAAATTCAGGAAGCACAATTCCAAGTTTCTGGGACACTAAGATCCCTTCAAGGAAACGTTCACGGGTGATATACCGGAGGATTACACCAATTGAGAAGTTTCAGAATCAGCTTTACAATCTGTGGAAGCTTCATGGAAATCCAGATGAACCAGAAGAGGTTTTGTTGGACCATAACGTGACCCACAACTTCACACCTAGCGATGAGATCGGCCTTGGAGCCATGCTGCTCAAAGCGGATAATGATTATATGCCTTCACATAATTGA 480 0.4521 MVAPSSATPLWRNGPENKPVLCNACGSRYRLCGSLDAYLPKHFHTGLLKNLENLKDNGNLNVKDKPSISSVPNSGSTIPSFWDTKIPSRKRSRVIYRRITPIEKFQNQLYNLWKLHGNPDEPEEVLLDHNVTHNFTPSDEIGLGAMLLKADNDYMPSHN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2302 159 CDD ZnF_GATA 8 31 IPR000679 GO:0006355|GO:0043565
Dod04g2302 159 PANTHER GATA ZINC FINGER PROTEIN 7 152 - -
Dod04g2302 159 Gene3D - 4 95 IPR013088 GO:0006355|GO:0008270
Dod04g2302 159 PANTHER OSJNBB0038F03.10 PROTEIN 7 152 IPR044589 -
Dod04g2302 159 ProSiteProfiles GATA-type zinc finger domain profile. 5 33 IPR000679 GO:0006355|GO:0043565
Dod04g2302 159 Pfam GATA zinc finger 6 33 IPR000679 GO:0006355|GO:0043565
Dod04g2302 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2302 Dod-Chr4 46876281 46877045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2302 6 42 C2C2-Gata Transcription Factor Family AT5G47140 70.270 8.82e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod04g2302 GATA 4.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2302 - - ccaj:109803880 136.346