Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod04g2276 | ATGGAGATTCACTACAGCAGCAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGACCCCTGCTGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATGTTGTAGCCACTGGGGGCAAGTGCATGCTCTTAAGATGGGTTAGAGAGGATGCCTTTAAGTCCTTGAATGAAAAGGCAAAAGAACCAGCAGTGCCTGAGCCAGAACCAGAGCCAACCACTGAAGTACTTTTCCTTTGCAGCTATGAAGGCTGCGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGACAATTCGTTTGTCACTATGAGGGGTGTGGAAAGAAATTTTTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTACGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACGCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCATCTCACCATGAAAAGAATGCAGCAGTGGATGTGACAAAGTATACTCCACCTTCAGAAAAGCAAACAAAAACTACTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCTTATGCATGTCCTTATGAAGGGTGTGAAAAAGCCTACATCCATCAATACAAGCTTAACCTCCATTTGAAGAGGGAGCATCCTGGGCATATTTATGATGAAAATGCCGAGCATGCTCAGGCTAATGCCGACAACGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGTGGGAAGCGGTCAAATGGTAAAATTCAGAAGCAAAGTAAGCCCAAACCAAACGTGAAGTTGCCTCCTTCGAAAAATGCAAAACGCAAAGTGCCCCCTCCTTCCACAGCCAGTGTAACTGTAGCTAAAAAGCCTTGGCCTGCGAAAGAGGAAGCTTACGATGAAGAGGATAGCGAAGAAACAGAAGAGGATCGCGACAATGTTGAAGATGGCTGGAGATATGCAGCAAACAACGAAGATGATGACGAAGAAACGGAATATGAAGACTGA | 1119 | 0.4495 | MEIHYSSSYFERRPILKSKTPAVKWVKEWVPQDVVATGGKCMLLRWVREDAFKSLNEKAKEPAVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRYAHEYKLKNHIASHHEKNAAVDVTKYTPPSEKQTKTTKPSGGAYGSASSDRPYACPYEGCEKAYIHQYKLNLHLKREHPGHIYDENAEHAQANADNEMDEASDQDAYGGKRSNGKIQKQSKPKPNVKLPPSKNAKRKVPPPSTASVTVAKKPWPAKEEAYDEEDSEETEEDRDNVEDGWRYAANNEDDDEETEYED* | 373 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod04g2276 | 372 | MobiDBLite | consensus disorder prediction | 203 | 220 | - | - | |
| Dod04g2276 | 372 | PANTHER | BNAA03G13270D PROTEIN | 4 | 371 | - | - | |
| Dod04g2276 | 372 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
| Dod04g2276 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 229 | 256 | IPR013087 | - | |
| Dod04g2276 | 372 | Coils | Coil | 260 | 280 | - | - | |
| Dod04g2276 | 372 | Gene3D | Classic Zinc Finger | 202 | 273 | - | - | |
| Dod04g2276 | 372 | Gene3D | Classic Zinc Finger | 163 | 195 | - | - | |
| Dod04g2276 | 372 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
| Dod04g2276 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
| Dod04g2276 | 372 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
| Dod04g2276 | 372 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
| Dod04g2276 | 372 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
| Dod04g2276 | 372 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
| Dod04g2276 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
| Dod04g2276 | 372 | MobiDBLite | consensus disorder prediction | 271 | 372 | - | - | |
| Dod04g2276 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 231 | 254 | IPR013087 | - | |
| Dod04g2276 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
| Dod04g2276 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 224 | 252 | IPR036236 | - | |
| Dod04g2276 | 372 | MobiDBLite | consensus disorder prediction | 195 | 226 | - | - | |
| Dod04g2276 | 372 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
| Dod04g2276 | 372 | SMART | c2h2final6 | 229 | 254 | IPR013087 | - | |
| Dod04g2276 | 372 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
| Dod04g2276 | 372 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Dod04g2276 | 372 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Dod04g2276 | 372 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 4 | 371 | - | - | |
| Dod04g2276 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 170 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod04g2276 | Dod-Chr4 | 46671090 | 46674686 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod04g2276 | 10 | 358 | C2H2 Transcription Factor Family | AT4G06634 | 66.393 | 1.81e-148 | 423 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Dod04g2276 | zf-C2H2 | 0.0082 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod04g2276 | - | - | gmx:100811480 | 635.95 |