Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2255 ATGACCTCTGCTCATGAAGTGGCTGATAATGAGGCTGATGGGCAGCAGCAGTCAGAGTCACAGATGCAGTCTTCCTCTGCAAATGGAATTTCTGATCCAGGAATTGGTGCCCAGAATGCTCAGTTTGCCACACCTGGACAGTTTGGACCTGGGTTAGCTATGGCACCACCTGTGTACCCATATCCGGATCCTTACTACAGAAGCATCTTTGCTCCCTATGAAACACAAGCTTATCCCCCACAGCCCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCCGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGCATATTGAGACGGAGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGTTACTAGGAATAGGAAGCCATACTTGCATGAATCTCGACATCTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGCCGGTTCCTGAATTCAAAGAAAAATGAGAACCAACATAATGACATGGCATCACCCGACAAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGATCTTGCTCCGTCAGATGGGATTGCCTAA 615 0.4618 MTSAHEVADNEADGQQQSESQMQSSSANGISDPGIGAQNAQFATPGQFGPGLAMAPPVYPYPDPYYRSIFAPYETQAYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVTRNRKPYLHESRHLHALRRARGCGGRFLNSKKNENQHNDMASPDKSQSNINLNSDKNDLAPSDGIA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2255 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 187 IPR001289 GO:0003700|GO:0006355
Dod04g2255 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 187 - -
Dod04g2255 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Dod04g2255 204 MobiDBLite consensus disorder prediction 167 196 - -
Dod04g2255 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Dod04g2255 204 Gene3D - 108 169 - -
Dod04g2255 204 MobiDBLite consensus disorder prediction 1 43 - -
Dod04g2255 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Dod04g2255 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Dod04g2255 204 MobiDBLite consensus disorder prediction 161 204 - -
Dod04g2255 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Dod04g2255 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2255 Dod-Chr4 46409928 46415651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2255 2 204 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.098 1.18e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod04g2255 CBFB_NFYA 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2255 K08064 - gmx:100499754 322.783