Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2253 ATGAAGGATTTATTGCTTCAAAAAGATAATCACTTTTGTGCTGATTGTAATGCTTCAGATCCTAAATGGGCGTCCGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGCTGTGCACAGAAATCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAAATGAAGAAATAGATGCAATGATTGAAGTTGGAGGAAACTTGTCTGCTAATTCAATTTATGAGGCTTATATTCCAGAAGGATATAAAAAACCTGGACCAGATGCCAGTCACGAGGAGCGTGCAAAATTCATCCGGTCAAAGTACGATTATCAAGAATTTTTGAAACCAAGTTTGCGCATTGCATCAACAAAAAGCTCTCATAGATCAAGTTTTTCTGAAAGGATTGAGAGTAGTTTTCGATGTACTACTAATTCACAGAAAACGGAAGGAAAGGTAGAGTTTATAGGAATGTTGAAGGTGAAAGTTATTAAAGGCACAGATTTAGCTGTCAGAGATATGATGACAAGTGATCCATATGTTGTCTTGAAACTTGGCCAACAGGCTGTTCAGACAACTGTAATAAACAGCAATTTGAATCCAGTCTGGAATCAGGAGCTTATGCTCTCTGTTCCACAGCAATTTGGGGCATTGAAATTGAAGGTGTTTGATCATGACTTGTTTTCAGCTGATGATGTAATGGGAGAAGCAGAGGTGGATCTTCAGCCACTGATTACATCTGCAATGGCATTTGGAGATGCTGGAATAATGTTTGAGGATATGCAGATAGGAAAATGGCTGAAGTCTCAGGACAATGCACTTAAAGAAGATAGCAGAATTAATATCATTGATGGTAAGGTTAGACAAGAGATGTCACTTGTGCTCCAGAATGTCGAATCTGGAGAGTTAGAGTTAGAACTCGAGTGGATTACCTCTTGA 933 0.3826 MKDLLLQKDNHFCADCNASDPKWASANIGVFVCLKCCAVHRNLGTHISKVLSVTLDEWSNEEIDAMIEVGGNLSANSIYEAYIPEGYKKPGPDASHEERAKFIRSKYDYQEFLKPSLRIASTKSSHRSSFSERIESSFRCTTNSQKTEGKVEFIGMLKVKVIKGTDLAVRDMMTSDPYVVLKLGQQAVQTTVINSNLNPVWNQELMLSVPQQFGALKLKVFDHDLFSADDVMGEAEVDLQPLITSAMAFGDAGIMFEDMQIGKWLKSQDNALKEDSRINIIDGKVRQEMSLVLQNVESGELELELEWITS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2253 310 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 309 IPR044518 GO:0005096|GO:0005543
Dod04g2253 310 SMART C2_3c 156 251 IPR000008 -
Dod04g2253 310 Pfam C2 domain 156 245 IPR000008 -
Dod04g2253 310 Gene3D Arf GTPase activating protein 1 119 IPR038508 -
Dod04g2253 310 Gene3D C2 domain 152 310 IPR035892 -
Dod04g2253 310 CDD C2_ArfGAP 154 299 - -
Dod04g2253 310 CDD ArfGap 1 107 - -
Dod04g2253 310 ProSiteProfiles C2 domain profile. 132 252 IPR000008 -
Dod04g2253 310 PRINTS HIV Rev interacting protein signature 29 46 IPR001164 GO:0005096
Dod04g2253 310 PRINTS HIV Rev interacting protein signature 10 29 IPR001164 GO:0005096
Dod04g2253 310 PRINTS HIV Rev interacting protein signature 50 71 IPR001164 GO:0005096
Dod04g2253 310 SUPERFAMILY ArfGap/RecO-like zinc finger 3 115 IPR037278 -
Dod04g2253 310 SMART arf_gap_3 2 120 IPR001164 GO:0005096
Dod04g2253 310 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 123 IPR001164 GO:0005096
Dod04g2253 310 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 309 - -
Dod04g2253 310 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 155 301 IPR035892 -
Dod04g2253 310 Pfam Putative GTPase activating protein for Arf 2 114 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2253 Dod-Chr4 46398544 46402344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2253 1 308 C2H2 Transcription Factor Family AT4G21160 70.347 4.94e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2253 K12486 - gmx:100777084 493.812