Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2235 ATGAAGAAGTCTTTAGATCATTTATCTTTGGGTCCTACCAAGGTTCCATCAATAAATATACCTAAAGAACCGGGACACAGTGCATGGGAGGTTTTATCTGGATCTGATACTAGCCTCTTTTCTAGCTCATTGCCTGTTTTGCCACATGAAAAGCCGAACTTGAATGGTGCTGTCGATGGTCATCAATCTATTGATGGCATCTCATCTGGCTTTAAAAAGCCTCATCAAGATGAACAGAGTAATGGTTCATGTGAAGATGTTGATACTTGTGCAATAGGAACCACGCTTCCAGATGATGAGGAGGAACTTTTAGCTGGCATAATGGATGATTTTGACCTAAGTGGTTTGCCAGGCTCCCTTGAGGACATGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAGCTGGAAACTGATCCTCAGGAAAGTCTCAACATTGGCCTGTCAAATTTAAGTCTCTCTGACAGTACTGTTGCCAATGGTTTGCCCCATTATTCTCTTAATGGTGTGGTAACTGTTGCTGGAGAGCATCCATATGGAGAGCACCCTTCTCGAACATTATTCGTTCGAAATATTAATAGTAATGTGGAGGATTCAGAGTTGAGAGCTCTCTTTGAGCAATATGGCGATATTAGGACTCTCTATACTGCTTGTAAACATCGGGGGTTTGTTATGATATCCTATTATGACATCCGTGCTGCTCGAACTGCTATGCGTGCATTACAAAACAAGCCTCTACGACGCAGGAAACTTGACATTCACTTCTCAATTCCAAAGGATAATCCGTCTGACAAGGACATCAACCAAGGAACGTTGGTAGTTTTCAATTTGGATCCATCTGTTTCTAACGAAGACCTCCGTATAATATTTGGGGCTTATGGCGAGGTCAAGGAGATTCGGGAGACACCTCACAAAAGGCATCATAAGTTCATTGAATTCTATGATGTTAGGGCCGCAGAAGCAGCTCTTAAATTATTAAATCGGAGTGACATAGCTGGTAAACGGATAAAGTTGGAACCTAGCCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAAATAAATCAAGAGCTTGAGCTAGATGAATCTCAGAGTTTCCGACATCAAGTGGGTTCACCTGTGGCCAATTCCCCACCTGGAAACTGGTTGCGGTTCAACAGCCCTGTTGAAAGTAATTCATTGCAATCAATCAGTAAATCTCCTGGTTCTAGGATCATGAGTCCATCAACAGGAAACCATTTACCAGGATTAGCTTCAATTTTGCAACCTCAGTTATCAAATTCTGCAAAGGGTGCAACTCCTGGGAGAGATTTAGGAAGGAACAGTCATGGAGAGCACATATTTGCTAGTAGTTATTCATCATATGGAAAGACATTTCAATCACATTCTCTTCCAGAATCAAAATTCAGCCAATATAGTGGAGTTTTGCCCTCTTTTGGTCAATCTAATTCAAATGTATCCTCAGTGGAAACCTTGTCTAGGCCAGCCAATGTAATGGAACACATATTTGCTAGTAGTAATTCATCACATGGGGAGACATTTCAATCAAATTCTCTTCCAGAGTCAAAATTCAGCCAATATAATGGAGCTTTGTCCTCTTTTGTTCGATCTAATTCAAATGTATCCTCAGTGGAAACCTTGTCGGGGCCACAGTTTCTGTGGGGAAGTTCAAGCCTGCACTCAGAGCATACCAAACCTTCAGCCTGGCCAACAGCATCTGTAGAACAACCATTTACCTCAAATGGCAATAGCCGTGCTTTCCCGTACTCAGGTCAAAATAGTTCCATTATTGGTTCGTCCCAGAATCATCACCATCATCATGTTGGCTCTGCTCCATCGGGTTTTCCCTTTGAGAGGAACTTTGGAATCCTTTCTGAGTCACCTGAAACCTCGTTCGTGAATCACTTTGGCTACAGAGGCATAGGTCTGGGGCATAATGATGGAAATTACATGGTTAATGTGGGTGGGTCTGTTAATACTGGCATTACTATACCAAGAAATAGGTCTGAAAATGTTTCATCTAACTTCAGAATGAGATTTTCTCCTAGACTTAGCCCTGTGTTTTTGGGTAATGGTTCTTACCCAGGACTGCCACCTACCACCATAGACAGTTTAATGGAACGTGGGCAGAACAGACGGATAGAGAACAATGAGAGCCAAGTTGATATCATGAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAACATCCCAAATAAATATACCTCAAAAATGCTGTTAGCTGCCATTGATGAATATCACAAGGGCACCTATGATTTTCTGTATCTGCCAATTGACTTTAAGAATAAATGCAATGTCGGATATGCATTTATCAACATGCTGTCAGCCTCCCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCACGAATCCAAGGAAAGGCTGCCCTGGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCCATTGTGTTCCATTCAGAGGGTCCTGAAGCTGATGATAAGATTATACAAGACCATCTTCCCTCCAACAAACTGAATATTCAGGTTCTTAGGCCAAGTGATTCTCCTGGAAGCCCTTCAAAGGATAGCCCTCCTGCGAGTTTGGAGACAAATTAA 2709 0.4186 MKKSLDHLSLGPTKVPSINIPKEPGHSAWEVLSGSDTSLFSSSLPVLPHEKPNLNGAVDGHQSIDGISSGFKKPHQDEQSNGSCEDVDTCAIGTTLPDDEEELLAGIMDDFDLSGLPGSLEDMEEYDLFGSGGGMELETDPQESLNIGLSNLSLSDSTVANGLPHYSLNGVVTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRIIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRNLMLQINQELELDESQSFRHQVGSPVANSPPGNWLRFNSPVESNSLQSISKSPGSRIMSPSTGNHLPGLASILQPQLSNSAKGATPGRDLGRNSHGEHIFASSYSSYGKTFQSHSLPESKFSQYSGVLPSFGQSNSNVSSVETLSRPANVMEHIFASSNSSHGETFQSNSLPESKFSQYNGALSSFVRSNSNVSSVETLSGPQFLWGSSSLHSEHTKPSAWPTASVEQPFTSNGNSRAFPYSGQNSSIIGSSQNHHHHHVGSAPSGFPFERNFGILSESPETSFVNHFGYRGIGLGHNDGNYMVNVGGSVNTGITIPRNRSENVSSNFRMRFSPRLSPVFLGNGSYPGLPPTTIDSLMERGQNRRIENNESQVDIMKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHKGTYDFLYLPIDFKNKCNVGYAFINMLSASLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPIVFHSEGPEADDKIIQDHLPSNKLNIQVLRPSDSPGSPSKDSPPASLETN* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2235 902 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Dod04g2235 902 Pfam RNA recognition motif 2 743 839 IPR007201 -
Dod04g2235 902 MobiDBLite consensus disorder prediction 63 86 - -
Dod04g2235 902 CDD RRM3_MEI2_like 746 831 IPR034454 -
Dod04g2235 902 MobiDBLite consensus disorder prediction 879 902 - -
Dod04g2235 902 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 259 IPR000504 GO:0003723
Dod04g2235 902 SUPERFAMILY RNA-binding domain, RBD 745 830 IPR035979 GO:0003676
Dod04g2235 902 Gene3D - 174 269 IPR012677 -
Dod04g2235 902 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 496 - -
Dod04g2235 902 PANTHER RNA RECOGNITION MOTIF-CONTAINING 498 896 - -
Dod04g2235 902 CDD RRM2_MEI2_like 270 340 - -
Dod04g2235 902 SMART rrm1_1 745 821 IPR000504 GO:0003723
Dod04g2235 902 SMART rrm1_1 272 340 IPR000504 GO:0003723
Dod04g2235 902 SMART rrm1_1 187 255 IPR000504 GO:0003723
Dod04g2235 902 MobiDBLite consensus disorder prediction 565 586 - -
Dod04g2235 902 Gene3D - 270 369 IPR012677 -
Dod04g2235 902 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Dod04g2235 902 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 338 IPR000504 GO:0003723
Dod04g2235 902 MobiDBLite consensus disorder prediction 1 22 - -
Dod04g2235 902 CDD RRM1_MEI2_like 185 261 IPR034453 -
Dod04g2235 902 PANTHER PROTEIN MEI2-LIKE 2 2 496 - -
Dod04g2235 902 PANTHER PROTEIN MEI2-LIKE 2 498 896 - -
Dod04g2235 902 SUPERFAMILY RNA-binding domain, RBD 183 346 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2235 Dod-Chr4 46186263 46191788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2235 183 328 Eukaryotic Initiation Factors Gene Family AT1G71770 27.097 6.62e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2235 - - gmx:100800877 1252.65