Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2221 ATGGGAATCCAGGGTCTATTGCCGCAACTGAAATCGATAATGGTTCCGATACACATAAAGGACTTGAAGGGGTCTTCAGTAGCCGTAGACACCTATTCTTGGCTCCACAAAGGCGCATTGTCTTGCAGCACCCAACTCTGCAAAGCCTTACCCACTTCCAGGCACATTGAGTATTGCATGCATAGAGTAAATTTGCTGCGCCACTTTGGTGTTAACCCTATTCTAGTGTTTGACGGAGGACTTCTCCCGATGAAGTCTGAACAAGAGAATAAGCGTGCCAGGGTAAGAAGGGAAAATCTTGCACGTGCAGTTGAACATGAGTCAAATGGAAATACTGCTGCTGCTTATGAGTGCTACCAGAAAGCTGTGGATATTTCACCTCTGATTGCAAGTGAGCTAATTCAGGTATTGAAGCAGGAGAATGTGCATTACGTTGTAGCTCCATACGAGGCAGATGCCCAGATGGCTTTCTTGGCAATTAGTGGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGGATTATCTTCAAAATGGACAAGTTCGGTCAAGGAGTGGAGTTTCAGTACTCCATGTTACAGAAGAATAAGGAGCTTAGTTTTGAAGGATTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGCCTCAAAAGGGCCCATGCAATCATTAAAAGATTTAAAAGTTACGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTCCTGTGCCTCCGTTTTATGAAGAGTCATTCAGGAAGGCTATACTGACTTTCCAATATCAAAGGGTGTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGAGACGAGTTGGACTTTTTAGGCCCACCAATGCCAAAAGATATAGCACAAGGCATAGCCAAAGGAGATCTAGACCCGTTTACCAAAATGCCATTCGAGGAAGAGAATCTTACTGCCAGGTTGGCTGCTGGAAATTCTCAATTTAAGACTCTTCATTCTGAAAGTGTGAAGAAAAAGATTGATCTGCCGGTGCAAAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGGAAATTTAGAGCTCCTCGGATATCACCTACCACTGCTAATCACAGTACATTAAATTCCTCTTCTGTCGATTCCCTGGAACTAGAGACTTTACAGGGCACAGCTTGTGAAACAGAGAACTCTGCTGCATCCATAGTTAGCTCCAAGAATTGGAGCAATGGCCCTCATGTTAATAACTATGAAGCTAGGCAGCCAATTCACAAACCTTGCATGGGGTTGCATAGGGAGCATGAGTACACAAATGTTCAAGACACAATTGAAGCAAAAACCAAGGAGGCAACGAGAAAGGTAATTGTGAGGAGTCCTTATTTTCAGCACAGTAAAGTAGAAAAGAATGATGGTAATGAAAAACAAGATTGCCCGTCTGAAGCTGGCGCTCTTGGTGGTGAGAAGAAAAATATGATATCTGACAGTGATTTAAGTACCAATCACATTACGAAAAAAGACTTGAAGAGGAAGATCTCCCCTAATGACAATATTCAAAGCGAAAATTTGCAGCCCAGCCAAATGCCTCTGACTTCACCTCCTCACGATGATGGTTACTGTGATCAGAGTGTGGATAGACCATTTACGGAAAATAATAATGCAGAAGAAAATTTTGGTGCAAACATTTCCCACATAGGCCATTACTCAGAAATAGCTGAGAAGTCCATGGAAAGATTTGTCTCCGTTATATCATCCTTTAGATGCTCCAAAGGCTCTCGTGCCAGTGGTCTCCGTGCCCCTTTGAGAGATGTTCGGAACACTTGTAATAATAGGCCTACGAATGTGGACTTGGGACAATATGCATATGTGCCAAAACAAAGGAAGACTAGCAGAATAGGTCCTGGGAATTAA 1983 0.4211 MGIQGLLPQLKSIMVPIHIKDLKGSSVAVDTYSWLHKGALSCSTQLCKALPTSRHIEYCMHRVNLLRHFGVNPILVFDGGLLPMKSEQENKRARVRRENLARAVEHESNGNTAAAYECYQKAVDISPLIASELIQVLKQENVHYVVAPYEADAQMAFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKVLKHLRYSGVPVPPFYEESFRKAILTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPMPKDIAQGIAKGDLDPFTKMPFEEENLTARLAAGNSQFKTLHSESVKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRISPTTANHSTLNSSSVDSLELETLQGTACETENSAASIVSSKNWSNGPHVNNYEARQPIHKPCMGLHREHEYTNVQDTIEAKTKEATRKVIVRSPYFQHSKVEKNDGNEKQDCPSEAGALGGEKKNMISDSDLSTNHITKKDLKRKISPNDNIQSENLQPSQMPLTSPPHDDGYCDQSVDRPFTENNNAEENFGANISHIGHYSEIAEKSMERFVSVISSFRCSKGSRASGLRAPLRDVRNTCNNRPTNVDLGQYAYVPKQRKTSRIGPGN* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2221 660 Gene3D - 1 207 - -
Dod04g2221 660 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Dod04g2221 660 SMART xpgn3 1 99 IPR006085 GO:0004518
Dod04g2221 660 Gene3D - 209 281 - -
Dod04g2221 660 MobiDBLite consensus disorder prediction 489 559 - -
Dod04g2221 660 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Dod04g2221 660 PANTHER EXONUCLEASE 1 1 634 IPR032641 GO:0006281|GO:0035312
Dod04g2221 660 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Dod04g2221 660 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Dod04g2221 660 SMART xpgineu 138 208 IPR006086 GO:0004518
Dod04g2221 660 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 634 IPR006084 -
Dod04g2221 660 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Dod04g2221 660 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Dod04g2221 660 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Dod04g2221 660 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Dod04g2221 660 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Dod04g2221 660 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Dod04g2221 660 MobiDBLite consensus disorder prediction 524 538 - -
Dod04g2221 660 MobiDBLite consensus disorder prediction 539 555 - -
Dod04g2221 660 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Dod04g2221 660 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2221 Dod-Chr4 46078427 46083417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2221 1 264 Core DNA Replication Machinery Family AT5G26680 27.437 1.79e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2221 K10746 - gmx:100798062 837.025