LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2217	ATGGCGTTCCCAAACCAATCCATGTCAGATTCTCCGCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATAGAGAACACCACCAATCGCCAAGTAACCTTCTGCAAGCGCAGGAATGGCTTGCTCAAGAAGGCATATGAACTATCTGTGCTGTGTGATGCTGAGGTTGCTCTAATTGTCTTCTCTAGCCGCGGCCGCCTCTATGAATATGCTAATAACAGGACAGTTGATGGAGTTTGGCAATTCTGGCAAATGATGGGTGAGGCTCTGAGCACAATGAATGCCAAAGAACTCAAAAACCTTGAGACCAAATTAGAAAAAGGGATTAGCAGAATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCATAATAACAACCAGTTTCTTAGAGCGAAGATAGCAGAAAGTGAGAGGAGCCAACATAACTGTAATGTCTTGCCTGGGGCCACAAACTATGAATCTATGCAATCTCAGCAGCAATTTGACTCTCGTGGCTACTTCCAAGTGACTGGATTACAACCCAACAATAATCACTACGCAAGGCAAGACCAGATGTCCCTTCACTTAGTGTAA	615	0.4472	MAFPNQSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRTVDGVWQFWQMMGEALSTMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQFLRAKIAESERSQHNCNVLPGATNYESMQSQQQFDSRGYFQVTGLQPNNNHYARQDQMSLHLV*	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2217	204	PANTHER	MADS BOX PROTEIN	82	198	-	-
	Dod04g2217	204	SUPERFAMILY	SRF-like	17	99	IPR036879	GO:0003677\|GO:0046983
	Dod04g2217	204	Gene3D	-	28	98	IPR036879	GO:0003677\|GO:0046983
	Dod04g2217	204	PRINTS	MADS domain signature	38	53	IPR002100	GO:0003677\|GO:0046983
	Dod04g2217	204	PRINTS	MADS domain signature	53	74	IPR002100	GO:0003677\|GO:0046983
	Dod04g2217	204	PRINTS	MADS domain signature	18	38	IPR002100	GO:0003677\|GO:0046983
	Dod04g2217	204	PANTHER	AGAMOUSB	10	76	-	-
	Dod04g2217	204	PANTHER	MADS BOX PROTEIN	10	76	-	-
	Dod04g2217	204	ProSitePatterns	MADS-box domain signature.	18	72	IPR002100	GO:0003677\|GO:0046983
	Dod04g2217	204	SMART	madsneu2	16	75	IPR002100	GO:0003677\|GO:0046983
	Dod04g2217	204	Pfam	K-box region	86	147	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod04g2217	204	Coils	Coil	100	120	-	-
	Dod04g2217	204	ProSiteProfiles	MADS-box domain profile.	16	76	IPR002100	GO:0003677\|GO:0046983
	Dod04g2217	204	MobiDBLite	consensus disorder prediction	1	22	-	-
	Dod04g2217	204	PANTHER	AGAMOUSB	82	198	-	-
	Dod04g2217	204	CDD	MADS_MEF2_like	17	79	IPR033896	GO:0000977\|GO:0045944
	Dod04g2217	204	ProSiteProfiles	K-box domain profile.	63	153	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod04g2217	204	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	25	72	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2217	Dod-Chr4	46040741	46046470	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g2217	14	204	MADS-box Gene Family	AT3G58780	55.085	3.47e-75	225

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Dod04g2217		K-box	5.3e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2217	K09264		-	gmx:732595	309.301

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod04g2217	04	46040741	46046470	Dod03g0614	03	7523819	7533550	PCT