Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2201 ATGGCTGAATATTCAGCAAGAAACGGTGACATTGTTTTAAATGTAAACAAGGGTGTTTCCAAAACAAGTGAAGAACAGTCAGGAAACAGTGCCTACATTGTTTTGCTGCAGAAGATGGTAGCTGAGGTGGTGGGGACTTATTTCCTGATATTTTCAGGGTGCGCTTCCGTGGTGGTGAACAATAACAACGACCATGTGGTGACAAATCCTGGGATTTCAATTGTTTGGGGACTGGCTGTGCTGGTCATTGTTTACTCCATTGGCCACATCTCTGGTGCCCATTTGAATCCTGCTGTCACCATTGCTTTTGCCTCCATCAGAAGGTTTCCCTTGATGCAGGTACCAGCTTATGTAGCAGCTCAGGTCCTTGGATCCACACTTGCAAGTGGAACTCTCAGGCTAATATTTAATGGCAAGCAAAACCAATTTTCAGGAACTCTCCCTTCAGGGTCTAACATCCAAGCTTTTGTGATTGAATTCATAATCACTTTTTACCTTATGTTCATCATATCCGGGGTTGCAACTGATAGCAGAGCGGTCGGTGAGTTGGCTGGGCTTGCAGTTGGCTCTACGGTACTGCTGAATGTGATGTTTGCAGGGGCAGTGACGGGAGCATCAATGAACCCAGCAAGGAGCATAGGGCCTGCTATTGTGCACAATGAATACAGAGGAATATGGGTGTACATGGTGGCCCCAGTTTTGGGGGCAGTGGCTGGTGCATGTGTTTACAACGTTCTACGCCACACAAACAAGCAATTGCCAAAGACTGCTTCTTTCCGCAAACGAGAAGGCCGTGACCATGATGGTGCCTCCAACTGA 819 0.4701 MAEYSARNGDIVLNVNKGVSKTSEEQSGNSAYIVLLQKMVAEVVGTYFLIFSGCASVVVNNNNDHVVTNPGISIVWGLAVLVIVYSIGHISGAHLNPAVTIAFASIRRFPLMQVPAYVAAQVLGSTLASGTLRLIFNGKQNQFSGTLPSGSNIQAFVIEFIITFYLMFIISGVATDSRAVGELAGLAVGSTVLLNVMFAGAVTGASMNPARSIGPAIVHNEYRGIWVYMVAPVLGAVAGACVYNVLRHTNKQLPKTASFRKREGRDHDGASN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2201 272 SUPERFAMILY Aquaporin-like 33 254 IPR023271 -
Dod04g2201 272 PANTHER AQUAPORIN NIP2-1 1 260 IPR034294 -
Dod04g2201 272 Pfam Major intrinsic protein 35 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 Gene3D Glycerol uptake facilitator protein. 4 258 IPR023271 -
Dod04g2201 272 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 260 - -
Dod04g2201 272 TIGRFAM MIP: MIP family channel proteins 41 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 CDD MIP 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dod04g2201 272 ProSitePatterns MIP family signature. 94 102 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2201 Dod-Chr4 45850355 45859817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2201 14 272 Major Intrinsic Protein MIP AT5G37820 54.478 1.39e-95 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2201 K09874 - gmx:100794883 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2201 04 45850355 45859817 Dod03g0595 03 7217857 7220990 PCT