Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2187 ATGGAGGAAGGGCATTGTACTTGTCCGAAAACGGGGCAATTGCTCGCCCACAACCGGATTGTTCCTAATCGTGCGCTTAGGAATTTGATCATGCAGTGGTGCACTGCACATGGAATACCCTATGAGCCGCTGGAGGTAATTGATCCGTCGGCTGAAACGTTTGCCGCAGCTTGTCCCTCCAAAGCTGCCCTTGAAGCCAACAGAGCAACCGCTACACTTCTCATTCAGCAGCTAGCTAATGGATCACAAGCTGCAAAGACTGTAGCTGCAAGGGAGATAAGATTGCTAGCGAAAACTGGAAAAGAGAACCGTGCCTTCATCGCAGAAGCAGGCGCAATTCCTCATCTTCGGGACTTGCTTTCATCTGCTAACACTGTTGTGCAGGAGAACTCAGTAACTGCATTGCTCAACCTCTCCATTTTTGACAGAAACAAAAGCAGGATAATGGATGAGGAAGGGTGTTTGGGATCAATAGTTGAGGTGTTGAGATTTGGACACACAACTGAGGCAAGGGAAAATGCTGCTGCTACATTGTTCAGCCTCTCTGCTGTCCATGACTACAAAAAGAGAATTGCAGATAATGATGGAGCTGTTGAATCACTGGCAGGTATGTTGCAAGAGGGGACCCCAAGAGGAAAAAAAGATGCTGTGACAGCATTGTTTAATCTTTCCACCCACACTGAGAATTGCGTGAGAATGATAGAGGCAGGGGCAGTAACAGCTCTAGTTGGCGCGTTGGGGAATGAAGGCGTTGCTGAGGAGGCAGCTGGTGCGCTGGCCTTGATTGTCCGGCAGCCTACTGGGGCCAAAGCAGTGGTGAGCGAGGAAGCAGCAGTAGCTGGATTGATAGGAATGATGCGTTGCGGAACACCGAGAGGTAAAGAGAATGCGGTTGCAGCGTTGTTGGAATTGTGCCGGAGTGGTGGTACAGCTGCAACCGAAAGGGTGGTTAGGGCACCTGCATTGGCCGGATTACTTCAAACCCTGCTTTTTACAGGAACAAAGCGGGCAAGACGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGAGTGCATCTCTACATTATGGTGGATTGGGAGTAGGGTATGCATTTGCTAGCAATTCAGCATCAACTACGGATACAAGCTTTGCTGGAGATGTTTCAGTACCAATGTCCATTTCTGTTTCAGTACCTGTATTATAG 1191 0.4878 MEEGHCTCPKTGQLLAHNRIVPNRALRNLIMQWCTAHGIPYEPLEVIDPSAETFAAACPSKAALEANRATATLLIQQLANGSQAAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLRDLLSSANTVVQENSVTALLNLSIFDRNKSRIMDEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADNDGAVESLAGMLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPTGAKAVVSEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGTAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCESASLHYGGLGVGYAFASNSASTTDTSFAGDVSVPMSISVSVPVL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2187 396 ProSiteProfiles U-box domain profile. 1 40 IPR003613 GO:0004842|GO:0016567
Dod04g2187 396 Gene3D - 189 347 IPR011989 -
Dod04g2187 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 40 IPR013083 -
Dod04g2187 396 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Dod04g2187 396 SMART arm_5 226 264 IPR000225 GO:0005515
Dod04g2187 396 SMART arm_5 100 140 IPR000225 GO:0005515
Dod04g2187 396 SMART arm_5 185 225 IPR000225 GO:0005515
Dod04g2187 396 Pfam Armadillo/beta-catenin-like repeat 101 139 IPR000225 GO:0005515
Dod04g2187 396 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 1 378 - -
Dod04g2187 396 SUPERFAMILY RING/U-box 4 41 - -
Dod04g2187 396 PANTHER U BOX DOMAIN-CONTAINING 1 378 - -
Dod04g2187 396 SUPERFAMILY ARM repeat 72 348 IPR016024 -
Dod04g2187 396 Gene3D - 45 188 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2187 Dod-Chr4 45478626 45479816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2187 1 396 U-box Gene Family AT1G29340 72.222 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2187 - - gmx:100811153 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2187 04 45478626 45479816 Dod03g0587 03 7085663 7088172 PCT