Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2168 ATGGTTGCAGCAAGTGATGGAAACCAAAGCAGGAAGAAGGCATCAACGAGAGGACATCACAAGTTTGTTGGTGTCAGGCAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAGGACTCGGTGCAGAAGGTAAGGCTTTGGCTTGGAACCTTCGACACTGCTGAGGATGCTGCTCGTGCATATGACACTGCTGCTCGTGCCTTGCGTGGTGCCAATGCCCGCACCAACTTTGAGTTGCCACAATCTGATGGACCCTCTGCAGGTGGTGGTAATAACACCTACATGCCTGATATCATTGAGCCCTTTTCATTTGGGGATGTGTGTGAGCCTGCAGGTGATGAATCAGGTGATGATGAGGGCCTTCTTGGTGCACTCAGGGCCAAACTGTTTGATATTGATCAAAAGGGTGTGATGATGTTTCCCTCACCCTCTAGTTCCCGAATTGTGGGTGTTGAATCTAGTAGTGTGACAATACTATCTCAGAACACCTGTCCTAATAACAAGAAAGTGGTATCTACATCAGGTTGTGCACCTCCTCGGATGATGAATGGAGTAGTTGCTGCTAGTACTACTGTGCCGGGTTGTACTAGTACCTCATCAAACACTTGTGGCAGGAGTGTGGTTATTCCTAATCATGATCATGAAAGTGGTTTGGCATGCATTAGTGTTGGAGTTAACTCACATCAATATCAATATCAATATTCTTGTCAACAACAACCCCTATCACTCATGATGATGACAAGTGTGAGCTGTGCCAATGAAGTAGCATATGATTTGCCTTGGCCTACTCAGATCTGCCAAGTCCCTGAAAGTTGTTTGTTTGCTTCTGTGAGTGCAGCCACATCTTCTACCTGGCCACTTGCTGGGGTGTTTGAGACCACTACTGATATGACACACTCAGATCATTATGGGCCATCAAGTAGCAATAGCAGTGGCCAACCCATTGTGGGGGGCATGCAGGTGCCTCTAATTGGTGGACCGGCAACGCAAGGATTTTGGACATCCGAGTTGCGACAACCCCTGCAATGGGAGGATAACAGTTGGCCTAATTTCAGTGGCTCTTGTGATCCTTTTCTCTATCTGTCCTCTGGGCTAGCTTAA 1101 0.4768 MVAASDGNQSRKKASTRGHHKFVGVRQRPSGRWVAEIKDSVQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFELPQSDGPSAGGGNNTYMPDIIEPFSFGDVCEPAGDESGDDEGLLGALRAKLFDIDQKGVMMFPSPSSSRIVGVESSSVTILSQNTCPNNKKVVSTSGCAPPRMMNGVVAASTTVPGCTSTSSNTCGRSVVIPNHDHESGLACISVGVNSHQYQYQYSCQQQPLSLMMMTSVSCANEVAYDLPWPTQICQVPESCLFASVSAATSSTWPLAGVFETTTDMTHSDHYGPSSSNSSGQPIVGGMQVPLIGGPATQGFWTSELRQPLQWEDNSWPNFSGSCDPFLYLSSGLA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2168 366 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 364 - -
Dod04g2168 366 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Dod04g2168 366 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Dod04g2168 366 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Dod04g2168 366 MobiDBLite consensus disorder prediction 1 21 - -
Dod04g2168 366 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Dod04g2168 366 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Dod04g2168 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 3 364 - -
Dod04g2168 366 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Dod04g2168 366 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Dod04g2168 366 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2168 Dod-Chr4 45303291 45304955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2168 9 77 AP2-EREBP Transcription Factor Family AT5G19790 69.565 6.38e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g2168 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2168 - - gmx:102661478 310.842