Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2162 ATGGACAAGGGGAGAAGCAAAAGCAGTGGTGAGGTATTGGATCATGTTGATGAAGGGGTGGATGAGAATTTGACCCATTTGGTTGAAGGAGTTGCAACGGATGCAGGTACTGGAGGTAGGTTGGGTGAAAGAGTTAAAGTAATTGGGGAAGTTGGGACTTCAGAAGAGATATGCAGTGATCTGGGTTTGAATAAGGAGCTAGAGGAGCCGCCTCAAGAAGTTGAGTGTCTGGACATGGGTAACAAACAAAAAATCAATGATACATTGTGTGAGGTTGATCAAGGAACTAGCTATAGTTCTAGAAATTTGGTTAGTGGGGAGGTACTCGAGACCCGTGTTGTAATAGATCCTTCTGCTCAGATTGGGCGTGCCAATGGAGATAATGGGAAATTGGAAGAAAAAGTTGATGAATCAGGGTTGAGCAAGGTACCCCATGAAGCACCTAAAGGGGTGTCTGAGACAGATAAAACTTCATGTGCCATTGATATAAAGTGCAGCAGCTGCACAGGGTTTAGTGAGAATTTGGAAGGAGAAATGATTTGTAGGATTTGCCATCTAGCTTCTGGGCAACCATTAGAAGCAACAGCTGTTGGTACTGCTAATAGTGCAACTAGTACAGATTTGATTCAGCTTGGTTGTGCATGCAAAGATGAGCTAGGCGCTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGCGGTGAGACTGCAAAAAATGTTTCAGATGTTACTGATAATGGATTTATGGAAGAGTGGAACGAAAGTAGATTCATCGTCATGGACAGTGGTAACAGTGGTAGTACCTCATCTAGCATGTTCGGAAGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCGTGCCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTAAATATGTTTTAG 945 0.4349 MDKGRSKSSGEVLDHVDEGVDENLTHLVEGVATDAGTGGRLGERVKVIGEVGTSEEICSDLGLNKELEEPPQEVECLDMGNKQKINDTLCEVDQGTSYSSRNLVSGEVLETRVVIDPSAQIGRANGDNGKLEEKVDESGLSKVPHEAPKGVSETDKTSCAIDIKCSSCTGFSENLEGEMICRICHLASGQPLEATAVGTANSATSTDLIQLGCACKDELGAAHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFMEEWNESRFIVMDSGNSGSTSSSMFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2162 314 SMART ringv_2 180 243 IPR011016 GO:0008270
Dod04g2162 314 Pfam RING-variant domain 192 242 IPR011016 GO:0008270
Dod04g2162 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 314 - -
Dod04g2162 314 MobiDBLite consensus disorder prediction 120 151 - -
Dod04g2162 314 PANTHER ZINC FINGER, RING-CH-TYPE 1 314 - -
Dod04g2162 314 MobiDBLite consensus disorder prediction 127 151 - -
Dod04g2162 314 SUPERFAMILY RING/U-box 178 245 - -
Dod04g2162 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 247 IPR013083 -
Dod04g2162 314 ProSiteProfiles Zinc finger RING-CH-type profile. 173 249 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2162 Dod-Chr4 45246625 45249638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2162 176 313 C3H Transcription Factor Family AT5G05830 39.437 1.11e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2162 - - gmx:100791129 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2162 04 45246625 45249638 Dod03g0559 03 6696761 6699791 PCT