Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2161 ATGTCTGCTCCTGCTGTTAATGGGAATGATTCCCTCACTGGTCACATCATATCCACTACAATTGGAGGGAAAAATGGGGAGCACAAACAGACTATAAGTTATATGGCAGAACGTGTTGTGGGCACTGGGTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATATAAGAACCGTGAACTACAGTTGATGCGCATGATGGATCATCCAAATGTGATATCATTGAAGCATTGTTTCTTTTCCACTACAAGTACAGATGAACTGTTTCTTAATTTGGTGATGGAATATGTACCGGAGTCCATGTATCGAGTCTTGAAGTTCTATAGTAGTGCTAACCAAAGAATGCCTCTTATCTATGTAAAACTCTATATGTACCAGATTTTCAGGGGGCTGGCTTATATCCATACAGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCACAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAGGGTGAAGCCAATATATCATATATATGTTCACGATTCTATCGGGCTCCAGAACTTATATTTGGTGCCACTGAGTATACTGCTTCAATTGATATTTGGTCAGCTGGCTGCGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTGTTTCCCGGTGAAAATGCAGTGGACCAGCTTGTTGAGATTATTAAGGTTCTTGGCACACCCACTCGGGAGGAAGTCCGCTGCATGAATCCAAACTACAATGACTTCAGGTTTCCACAGAGAAAAGCACACCCTTGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTCGCTTCCCGACTGCTACAGTACTCCCCAAGTCTTCGATGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCGCTTGCCAAATGGTTGTCCATTTCCATCACTATTCAACTTTAAACAAGAGTTATCTGGAGCACCTCTGGAGCTTGTTAATAAATTGATACCGGACCATTTCAAGCAGGCAAATAGGGCTACAAATTGCTCACCCTGCAGGAACATGATATGA 1131 0.4332 MSAPAVNGNDSLTGHIISTTIGGKNGEHKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKFYSSANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQRKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGCPFPSLFNFKQELSGAPLELVNKLIPDHFKQANRATNCSPCRNMI* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2161 376 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Dod04g2161 376 SUPERFAMILY Protein kinase-like (PK-like) 33 343 IPR011009 -
Dod04g2161 376 CDD STKc_GSK3 29 321 IPR039192 -
Dod04g2161 376 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2161 376 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 364 - -
Dod04g2161 376 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2161 376 PANTHER BNAC07G50210D PROTEIN 1 364 - -
Dod04g2161 376 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2161 376 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Dod04g2161 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Dod04g2161 376 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2161 Dod-Chr4 45236754 45241829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2161 38 329 MAP Kinase Gene Family AT3G59790 36.808 2.19e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Dod04g2161 Pkinase 5.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2161 K14502 - gmx:100779909 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0557 03 6675493 6681498 Dod04g2161 04 45236754 45241829 PCT
Dod03g0022 03 403711 410323 Dod04g2161 04 45236754 45241829 PCT